View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5478_low_5 (Length: 671)

Name: NF5478_low_5
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5478_low_5
NF5478_low_5
[»] chr4 (8 HSPs)
chr4 (19-608)||(16558863-16559456)
chr4 (619-661)||(16559493-16559535)
chr4 (510-594)||(47680395-47680480)
chr4 (510-563)||(47680693-47680746)
chr4 (498-594)||(11307291-11307388)
chr4 (498-535)||(51681598-51681635)
chr4 (511-563)||(47680939-47680991)
chr4 (522-562)||(51681334-51681374)
[»] chr1 (7 HSPs)
chr1 (498-608)||(26231642-26231753)
chr1 (510-591)||(4392197-4392278)
chr1 (498-586)||(43834555-43834644)
chr1 (510-562)||(6182444-6182496)
chr1 (510-562)||(43834276-43834328)
chr1 (450-500)||(15327847-15327897)
chr1 (498-558)||(15327916-15327976)
[»] chr3 (4 HSPs)
chr3 (498-606)||(23161964-23162072)
chr3 (520-593)||(32201121-32201195)
chr3 (498-593)||(43978576-43978673)
chr3 (498-592)||(40196115-40196209)
[»] chr8 (5 HSPs)
chr8 (518-592)||(5981737-5981812)
chr8 (498-563)||(5981475-5981540)
chr8 (457-500)||(5981850-5981893)
chr8 (450-500)||(12156775-12156825)
chr8 (520-608)||(2954495-2954584)
[»] chr6 (2 HSPs)
chr6 (518-608)||(22605243-22605333)
chr6 (545-608)||(7301570-7301634)
[»] chr7 (2 HSPs)
chr7 (543-608)||(27391757-27391822)
chr7 (505-593)||(27938827-27938915)
[»] chr2 (2 HSPs)
chr2 (510-606)||(10066603-10066700)
chr2 (52-116)||(37413950-37414014)
[»] scaffold0039 (1 HSPs)
scaffold0039 (498-556)||(29083-29141)
[»] chr5 (3 HSPs)
chr5 (543-604)||(5963788-5963849)
chr5 (518-594)||(41340359-41340434)
chr5 (541-593)||(41341558-41341610)


Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 19 - 608
Target Start/End: Original strand, 16558863 - 16559456
Alignment:
Q  19 gatgaatgtgtattttctcataggtggtcattgattgctggaagaattcctggaagaacagcagaagaaatagaaaaatattggaattcaagacactcga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16558863 gatgaatgtgtattttctcataggtggtcattgattgctggaagaattcctggaagaacagcagaagaaatagaaaaatattggaattcaagacactcga 16558962  T
Q  119 ctagcgaatgaagtgctagctatgaatgaat----caagaaatttgtgggtaacttttgagggaaattaaaagaatgtcgatttttattattacggctac 214  Q
    |||||||||||||||| ||||||||||||||    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  16558963 ctagcgaatgaagtgccagctatgaatgaatgaatcaagaaatttgtgggtaacttt-gagggaaatgaaaagaatgtcgatttttattattacggctac 16559061  T
Q  215 ttttgtttttgacaaaaatattatta-tgctacttaaagtagcagctatatgaaatgaagcaagaaatgaatcttgtcaatttatatcataatgctattt 313  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16559062 ttttgtttttgacaaaaatattattactgctacttgaagtagcagctatatgaaatgaagcaagaaatgaatcttgtcaatttatatcataatgctattt 16559161  T
Q  314 ggtgtttaattttaattagaagatctacttttcactgttcgtgtaaacaacagctggtttactgcagtgcattgtaacttcattggcattgtgtatttgt 413  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  16559162 ggtgtttaattttaattagaagatctactattcactgttcgtgtaaacaacagctcgtttactgcagtgcattgtaacttcactggcattgtgtatttgt 16559261  T
Q  414 gttgagaacttctccaaatttgttagggtgcaagcagttgggaaatcaagtgtgagcgattatgtcacacattaattaggaatggagaggggactgatat 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||| |||||    
T  16559262 gttgagaacttctccaaatttgttagggtgcaagcagttgggaaatcaagtgtgagcgattatgttacacatcgattaggaatggagaggggaccgatat 16559361  T
Q  514 acctattgccttaagattttggttggaaatgtggtgtctaagtctcttatggtcctaaacgttcagcccattgccgctccccggactccccaaca 608  Q
    | |||||  ||||||||||||| |||| ||||||||||||||||||||||  |||||||||||  | ||||||||||||||||||||||||||||    
T  16559362 atctattatcttaagattttggatggagatgtggtgtctaagtctcttataatcctaaacgtttggtccattgccgctccccggactccccaaca 16559456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 619 - 661
Target Start/End: Original strand, 16559493 - 16559535
Alignment:
Q  619 gcatccatacaccggggtgtctaagtacgaaggattacctatg 661  Q
    |||||||||||||| ||||||||||||| ||||||||||||||    
T  16559493 gcatccatacaccgtggtgtctaagtacaaaggattacctatg 16559535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 510 - 594
Target Start/End: Original strand, 47680395 - 47680480
Alignment:
Q  510 atatacctattgccttaagattttggttggaaatgtggtgtctaagtctctta-tggtcctaaacgttcagcccattgccgctccc 594  Q
    ||||||||  ||||||||| |||| | |||||||||||| ||||| ||||||| ||||||| |||||| | | |||||||||||||    
T  47680395 atatacctgatgccttaaggtttttggtggaaatgtggtttctaaatctcttattggtcctgaacgtttaactcattgccgctccc 47680480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 510 - 563
Target Start/End: Original strand, 47680693 - 47680746
Alignment:
Q  510 atatacctattgccttaagattttggttggaaatgtggtgtctaagtctcttat 563  Q
    ||||||||  ||||||||| |||||| |||| ||||||||||||||||||||||    
T  47680693 atatacctgatgccttaaggttttgggtggagatgtggtgtctaagtctcttat 47680746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 594
Target Start/End: Complemental strand, 11307388 - 11307291
Alignment:
Q  498 gagaggggactgatatacctattgccttaagattttggttggaaatgtggtgtctaagtctctta-tggtcctaaacgttcagcccattgccgctccc 594  Q
    ||||||||||   |||||||  ||||||||  |||||| |||| ||||||||||||||||||||| ||||||| ||| || |||  |||| |||||||    
T  11307388 gagaggggacacgtatacctgatgccttaatgttttgggtggagatgtggtgtctaagtctcttagtggtcctgaacatttagcttattgtcgctccc 11307291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 535
Target Start/End: Original strand, 51681598 - 51681635
Alignment:
Q  498 gagaggggactgatatacctattgccttaagattttgg 535  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  51681598 gagaggggactcatatacccattgccttaagattttgg 51681635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 511 - 563
Target Start/End: Original strand, 47680939 - 47680991
Alignment:
Q  511 tatacctattgccttaagattttggttggaaatgtggtgtctaagtctcttat 563  Q
    |||||||  ||||||||| |||| | |||||||||||| ||||||||||||||    
T  47680939 tatacctgatgccttaaggtttttggtggaaatgtggtttctaagtctcttat 47680991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 522 - 562
Target Start/End: Original strand, 51681334 - 51681374
Alignment:
Q  522 ccttaagattttggttggaaatgtggtgtctaagtctctta 562  Q
    ||||||| |||||| |||| |||||||||||||||||||||    
T  51681334 ccttaaggttttgggtggagatgtggtgtctaagtctctta 51681374  T

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Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 498 - 608
Target Start/End: Complemental strand, 26231753 - 26231642
Alignment:
Q  498 gagaggggactgatatacctattgccttaagattttggttggaaatgtggtgtctaagtctctta-tggtcctaaacgttcagcccattgccgctccccg 596  Q
    ||||||||||  ||||||| ||| ||||||| |||||| |||| |||||||||| |||||||||| ||||||  |||||| ||||||||||||||  |||    
T  26231753 gagaggggacccatataccaattaccttaaggttttgggtggagatgtggtgtccaagtctcttagtggtccataacgtttagcccattgccgctttccg 26231654  T
Q  597 gactccccaaca 608  Q
    ||||||||||||    
T  26231653 gactccccaaca 26231642  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 510 - 591
Target Start/End: Complemental strand, 4392278 - 4392197
Alignment:
Q  510 atatacctattgccttaagattttggttggaaatgtggtgtctaagtctcttatggtcctaaacgttcagcccattgccgct 591  Q
    ||||||||  |||||||||||||||| |||| ||||||||| |||||  |||||||||||  |||||   ||||||||||||    
T  4392278 atatacctgatgccttaagattttggatggagatgtggtgtataagtgacttatggtccttgacgtttgacccattgccgct 4392197  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 498 - 586
Target Start/End: Original strand, 43834555 - 43834644
Alignment:
Q  498 gagaggggactgatatacctattgccttaagattttggttggaaatgtggtgtctaagtctctt-atggtcctaaacgttcagcccattg 586  Q
    ||||||||||  ||||||||| || |||||| |||| | |||| |||||| ||||||||||||| ||||||||| ||||| || ||||||    
T  43834555 gagaggggacccatatacctaatgtcttaaggtttttgatggagatgtggcgtctaagtctcttgatggtcctagacgtttagtccattg 43834644  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 510 - 562
Target Start/End: Original strand, 6182444 - 6182496
Alignment:
Q  510 atatacctattgccttaagattttggttggaaatgtggtgtctaagtctctta 562  Q
    ||||||||  |||||||||||||||| |||| ||||||||| |||||||||||    
T  6182444 atatacctgatgccttaagattttgggtggagatgtggtgtataagtctctta 6182496  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 510 - 562
Target Start/End: Original strand, 43834276 - 43834328
Alignment:
Q  510 atatacctattgccttaagattttggttggaaatgtggtgtctaagtctctta 562  Q
    ||||||||| ||| |||||||||||| |||| |||||| ||||||||||||||    
T  43834276 atatacctaatgctttaagattttggatggagatgtggcgtctaagtctctta 43834328  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 450 - 500
Target Start/End: Original strand, 15327847 - 15327897
Alignment:
Q  450 gttgggaaatcaagtgtgagcgattatgtcacacattaattaggaatggag 500  Q
    |||||||||||||||||||| ||||||||| |||||  | |||||||||||    
T  15327847 gttgggaaatcaagtgtgagtgattatgtctcacatcgactaggaatggag 15327897  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 558
Target Start/End: Original strand, 15327916 - 15327976
Alignment:
Q  498 gagaggggactgatatacctattgccttaagattttggttggaaatgtggtgtctaagtct 558  Q
    ||||||||||  |||||||| ||| ||| || |||||| |||| |||||||||||||||||    
T  15327916 gagaggggacccatatacctgttgtcttgaggttttgggtggagatgtggtgtctaagtct 15327976  T

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Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 498 - 606
Target Start/End: Original strand, 23161964 - 23162072
Alignment:
Q  498 gagaggggactgatatacctattgccttaagattttggttggaaatgtggtgtctaagtctcttatggtcctaaacgttcagcccattgccgctccccgg 597  Q
    |||||| |||| |||||||   |||||||||||||||| |||| ||||||||| ||| | ||||||||||||  |||||  |||||||| ||||||||||    
T  23161964 gagaggtgactcatatacccgatgccttaagattttgggtggagatgtggtgtttaattttcttatggtcctggacgtttggcccattgtcgctccccgg 23162063  T
Q  598 actccccaa 606  Q
    |||||||||    
T  23162064 actccccaa 23162072  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 520 - 593
Target Start/End: Original strand, 32201121 - 32201195
Alignment:
Q  520 tgccttaagattttggttggaaatgtggtgtctaagtctctta-tggtcctaaacgttcagcccattgccgctcc 593  Q
    |||||||||||||||| |||| ||||||||||||||| ||||| ||||||| |||||| |||||||||| |||||    
T  32201121 tgccttaagattttgggtggagatgtggtgtctaagtttcttagtggtcctgaacgtttagcccattgctgctcc 32201195  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 498 - 593
Target Start/End: Complemental strand, 43978673 - 43978576
Alignment:
Q  498 gagaggggactgatatacctattgccttaagattttggttggaaatgtggtgtctaagtctctta--tggtcctaaacgttcagcccattgccgctcc 593  Q
    |||||| |||| ||||||||||||||||||| |||||| |||| ||||| | |||||||||||||   ||||||| ||||| | ||||||||||||||    
T  43978673 gagaggagactcatatacctattgccttaaggttttgggtggagatgtgatatctaagtctcttaacgggtcctagacgtttaacccattgccgctcc 43978576  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 592
Target Start/End: Complemental strand, 40196209 - 40196115
Alignment:
Q  498 gagaggggactgatatacctattgccttaagattttggttggaaatgtggtgtctaagtctcttatggtcctaaacgttcagcccattgccgctc 592  Q
    ||||||||||  ||||||||   |||||||| |||||| |||| || ||| ||||||||||||||||||| || | |||  ||||||||||||||    
T  40196209 gagaggggacccatatacctgacgccttaaggttttgggtggagatatggagtctaagtctcttatggtcttagatgtttggcccattgccgctc 40196115  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 518 - 592
Target Start/End: Complemental strand, 5981812 - 5981737
Alignment:
Q  518 attgccttaagattttggttggaaatgtggtgtctaagtctctta-tggtcctaaacgttcagcccattgccgctc 592  Q
    ||||||||||| |||||| |||| ||||||||||||||||||||| |||||||  | ||| |||||||||||||||    
T  5981812 attgccttaaggttttgggtggagatgtggtgtctaagtctcttactggtccttgaagtttagcccattgccgctc 5981737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 498 - 563
Target Start/End: Complemental strand, 5981540 - 5981475
Alignment:
Q  498 gagaggggactgatatacctattgccttaagattttggttggaaatgtggtgtctaagtctcttat 563  Q
    ||||||||||  || |||||  ||||||||| |||||| |||||||||||||||||||||||||||    
T  5981540 gagaggggacccatgtacctgatgccttaaggttttgggtggaaatgtggtgtctaagtctcttat 5981475  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 500
Target Start/End: Complemental strand, 5981893 - 5981850
Alignment:
Q  457 aatcaagtgtgagcgattatgtcacacattaattaggaatggag 500  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||    
T  5981893 aatcaagtgtgagggattatgtcccacatcaattaggaatggag 5981850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 450 - 500
Target Start/End: Complemental strand, 12156825 - 12156775
Alignment:
Q  450 gttgggaaatcaagtgtgagcgattatgtcacacattaattaggaatggag 500  Q
    |||||| ||||||||||||| ||||||||| |||||  |||||||||||||    
T  12156825 gttgggtaatcaagtgtgagtgattatgtcccacatcgattaggaatggag 12156775  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 608
Target Start/End: Complemental strand, 2954584 - 2954495
Alignment:
Q  520 tgccttaagattttggttggaaatgtggtgtctaagtctctta-tggtcctaaacgttcagcccattgccgctccccggactccccaaca 608  Q
    ||||||||| |||| | |||| |||||| |||||||||||||| |||||||  |||||   ||||||||||||||| || || |||||||    
T  2954584 tgccttaaggttttcggtggagatgtggcgtctaagtctcttattggtcctggacgtttgacccattgccgctcccggggcttcccaaca 2954495  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 518 - 608
Target Start/End: Complemental strand, 22605333 - 22605243
Alignment:
Q  518 attgccttaagattttggttggaaatgtggtgtctaagtctcttatggtcctaaacgttcagcccattgccgctccccggactccccaaca 608  Q
    ||||||||||| |||||| |   |||||||||| |||||||||||||||| |  |||||  |||||||||||||||| || ||||||||||    
T  22605333 attgccttaaggttttgggtaagaatgtggtgtttaagtctcttatggtcttggacgtttggcccattgccgctcccggggctccccaaca 22605243  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 545 - 608
Target Start/End: Complemental strand, 7301634 - 7301570
Alignment:
Q  545 tggtgtctaagtctctta-tggtcctaaacgttcagcccattgccgctccccggactccccaaca 608  Q
    |||||||||||||||||| |||||||| | ||| ||||||||| ||||||||  |||||||||||    
T  7301634 tggtgtctaagtctcttagtggtcctagaggtttagcccattgtcgctccccaaactccccaaca 7301570  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 608
Target Start/End: Complemental strand, 27391822 - 27391757
Alignment:
Q  543 tgtggtgtctaagtctcttatggtcctaaacgttcagcccattgccgctccccggactccccaaca 608  Q
    |||||||| |||||||||||| ||| | ||||||  || ||||||||||||||| |||||||||||    
T  27391822 tgtggtgtttaagtctcttatagtcttgaacgtttggctcattgccgctccccgaactccccaaca 27391757  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 505 - 593
Target Start/End: Original strand, 27938827 - 27938915
Alignment:
Q  505 gactgatatacctattgccttaagattttggttggaaatgtggtgtctaagtctctta-tggtcctaaacgttcagcccattgccgctcc 593  Q
    |||| |||||||||  |||||||| |||||| || | |||||||||| |||||||||| |||||||| || |||||| ||||||||||||    
T  27938827 gactcatatacctaaagccttaaggttttggatgtagatgtggtgtc-aagtctcttagtggtcctagacattcagctcattgccgctcc 27938915  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 510 - 606
Target Start/End: Original strand, 10066603 - 10066700
Alignment:
Q  510 atatacctattgccttaagattttggttggaaatgtggtgtctaagtctctta-tggtcctaaacgttcagcccattgccgctccccggactccccaa 606  Q
    ||||||||| |||||||||||||||| |||| ||||||| | ||| ||||||| |||||||  || || ||  ||||| ||||||| |||||||||||    
T  10066603 atatacctaatgccttaagattttgggtggagatgtggtatataaatctcttagtggtcctggacatttagaacattgtcgctccctggactccccaa 10066700  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 37414014 - 37413950
Alignment:
Q  52 attgctggaagaattcctggaagaacagcagaagaaatagaaaaatattggaattcaagacactc 116  Q
    ||||| |||||||| |||||||||||||| ||||||||| | || || |||| ||||||||||||    
T  37414014 attgcgggaagaatacctggaagaacagctgaagaaataaagaattactggatttcaagacactc 37413950  T

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Target: scaffold0039 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 498 - 556
Target Start/End: Original strand, 29083 - 29141
Alignment:
Q  498 gagaggggactgatatacctattgccttaagattttggttggaaatgtggtgtctaagt 556  Q
    ||||||||||| ||||| ||  || ||||||||||||| |||| |||||||||||||||    
T  29083 gagaggggactcatatatctgatgtcttaagattttgggtggagatgtggtgtctaagt 29141  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 604
Target Start/End: Original strand, 5963788 - 5963849
Alignment:
Q  543 tgtggtgtctaagtctcttatggtcctaaacgttcagcccattgccgctccccggactcccc 604  Q
    |||||||| ||||||||||||||||||  |||||   ||||||||||||||| || ||||||    
T  5963788 tgtggtgtttaagtctcttatggtcctggacgtttgacccattgccgctcccggggctcccc 5963849  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 518 - 594
Target Start/End: Original strand, 41340359 - 41340434
Alignment:
Q  518 attgccttaagattttggttggaaatgtggtgtctaagtctcttatggtcctaaacgttcagcccattgccgctccc 594  Q
    |||||||||||||||||| |   | |||||||| |||||||||||||||| |  |||||  ||||||||||||||||    
T  41340359 attgccttaagattttggataagagtgtggtgtttaagtctcttatggtcttggacgtt-tgcccattgccgctccc 41340434  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 593
Target Start/End: Original strand, 41341558 - 41341610
Alignment:
Q  541 aatgtggtgtctaagtctcttatggtcctaaacgttcagcccattgccgctcc 593  Q
    |||||||||| |||||||||||| |||||  |||||  |||||||||||||||    
T  41341558 aatgtggtgtttaagtctcttatagtcctggacgtttggcccattgccgctcc 41341610  T

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