View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_51 (Length: 282)
Name: NF5478_low_51
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_51 |
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| [»] chr1 (6 HSPs) |
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| [»] scaffold0017 (3 HSPs) |
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| [»] scaffold0061 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 25 - 282
Target Start/End: Original strand, 44614428 - 44614685
Alignment:
| Q |
25 |
tcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagtaattctacctggcaggtatacttatgttcc |
124 |
Q |
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| T |
44614428 |
tcttggagagaaacttactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagtaattctacctggcaggtatacttatgttcc |
44614527 |
T |
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| Q |
125 |
tttttactgaaattgtggtttattaactcaatcatgaatacttttaatattaaaaatatctttctttgttgatatatgtgtaactaaagcatttctataa |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44614528 |
tttttactgaaattgtggtttattaactcaatcatgaatacttttaatattgaaaatatctttctttgttgatatatgtgtaactaaagcatttctataa |
44614627 |
T |
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| Q |
225 |
tttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcat |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44614628 |
tttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcat |
44614685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 113 - 282
Target Start/End: Complemental strand, 44794053 - 44793884
Alignment:
| Q |
113 |
tacttatgttcctttttactgaaattgtggtttattaactcaatcatgaatacttttaatattaaaaatatctttctttgttgatatatgtgtaactaaa |
212 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44794053 |
tacttatatttctttttactgaaattgtggtttattaactcaatcatgaatacttttaatattgaaaatatctttctttgttgatatatgtgtaactaaa |
44793954 |
T |
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| Q |
213 |
gcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcat |
282 |
Q |
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| T |
44793953 |
gcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcat |
44793884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 17810013 - 17809928
Alignment:
| Q |
21 |
accgtcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagtaattctacctgg |
106 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | ||||||||| |
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| T |
17810013 |
accgtcttggagagatacttactccagattcttgaacactttgatattgaaagtcttcacgtggtggaagcagtgaatctacctgg |
17809928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 44784036 - 44783964
Alignment:
| Q |
25 |
tcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagtaat |
97 |
Q |
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|||||||||||||| ||||||| ||||||||| ||||| ||||||| | ||||||| |||||||||||||||| |
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| T |
44784036 |
tcttggagagaaacctactccaaattcttgaatactttaatattgagaatcatcatctggtggaagcagtaat |
44783964 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 35900863 - 35900934
Alignment:
| Q |
25 |
tcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagtaa |
96 |
Q |
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| T |
35900863 |
tcttggagagaaacttgctccaaattcttgaacacattgatattgaaaatcttcttgtggaggaagcagtaa |
35900934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 11542579 - 11542502
Alignment:
| Q |
201 |
tgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatc |
278 |
Q |
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||||||||||||||| ||| | |||||||||||||||||||| || ||||||| | ||| |||||||||||||||| |
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| T |
11542579 |
tgtgtaactaaagcacttcaacaatttgtattgcatttctcagtgatcaataacatgtcatcaaagacaatatcaatc |
11542502 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 182384 - 182450
Alignment:
| Q |
25 |
tcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagc |
91 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
182384 |
tcttggagagaaacttactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagc |
182450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 191 - 279
Target Start/End: Original strand, 171525 - 171613
Alignment:
| Q |
191 |
tgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatct |
279 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| ||| ||||| ||||||||||| |
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| T |
171525 |
tgttgatatatttgtaactaaagcatttctacaatttgtattgcatttctcagtgtttaataatctttcatcaaagaaaatatcaatct |
171613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 171297 - 171362
Alignment:
| Q |
25 |
tcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaag |
90 |
Q |
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|||||||||||||| ||||||| ||||||||| ||||| |||||| | | |||||||||||||| |
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| T |
171297 |
tcttggagagaaacctactccaaattcttgaatactttactattgagaattttcatgtggtggaag |
171362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 191 - 279
Target Start/End: Complemental strand, 27267 - 27179
Alignment:
| Q |
191 |
tgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatct |
279 |
Q |
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|
||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| ||| ||||| ||||||||||| |
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| T |
27267 |
tgttgatatatttgtaactaaagcatttctacaatttgtattgcatttctcagtgtttaataatctttcatcaaagaaaatatcaatct |
27179 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 27495 - 27430
Alignment:
| Q |
25 |
tcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaag |
90 |
Q |
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|
|||||||||||||| ||||||| ||||||||| ||||| |||||| | | |||||||||||||| |
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| T |
27495 |
tcttggagagaaacctactccaaattcttgaatactttactattgagaattttcatgtggtggaag |
27430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 191 - 282
Target Start/End: Complemental strand, 29505639 - 29505548
Alignment:
| Q |
191 |
tgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcat |
282 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||| ||| ||||||| |||||||||||| |
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| T |
29505639 |
tgttgatatatgtgtaactaaacattttctacaatttgtattgcatttctcaatgttcaataatctgtcatcaaagacagtatcaatctcat |
29505548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 29505869 - 29505800
Alignment:
| Q |
25 |
tcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagt |
94 |
Q |
| |
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|||||||||||||| || |||| ||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
29505869 |
tcttggagagaaacctattccaaattcttgaatgctttgatattgaaagtgttcatgtggtggaagcagt |
29505800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 26730040 - 26730111
Alignment:
| Q |
23 |
cgtcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagt |
94 |
Q |
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|
|||||||||||||||| |||||||||||||||||||| ||||| ||||||| | |||||||||||||||||| |
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| T |
26730040 |
cgtcttggagagaaacttactccagattcttgaacaccttgatcttgaaagccttcatgtggtggaagcagt |
26730111 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 29218319 - 29218246
Alignment:
| Q |
21 |
accgtcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagt |
94 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||||| | | ||||||| | |||||||||| |||||||||| |
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| T |
29218319 |
accgtcttggaaagaaacctactccaaattcttgaatgcgataatattgagaatcatcatgtgctggaagcagt |
29218246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 29331618 - 29331545
Alignment:
| Q |
21 |
accgtcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagt |
94 |
Q |
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||||||||||| |||||| ||||||| ||||||||| | | ||||||| | |||||||||| |||||||||| |
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| T |
29331618 |
accgtcttggaaagaaacctactccaaattcttgaatgcgataatattgagaatcatcatgtgctggaagcagt |
29331545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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