View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_54 (Length: 280)
Name: NF5478_low_54
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 8353024 - 8353284
Alignment:
| Q |
1 |
tatcaatggctaagactactcctaaccacacacaaactgtatctggttgggcagctcatgattcttccggcaagattaccccatacaccttcaaaagaag |
100 |
Q |
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| T |
8353024 |
tatcaatggctaagactactcctaaccacacacaaactgtatctggttgggcagctcatgattcttccggcaagattaccccatacaccttcaaaagaag |
8353123 |
T |
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| Q |
101 |
gtaactatctatcttttatttcatgcattcttgtatatattgtagtacctttttgatcttaactcctcaatttcaatttcaatttcatgtattaagggag |
200 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8353124 |
gtaactatcttttatttatttcatgcattcttgtatatattgtagtacctttttgatcttaactc------ttcaatttcaatttcatgtattaagggag |
8353217 |
T |
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| Q |
201 |
aacggtggtactgatgtgactataaagatattgtattgtggaatttgccatactgatgttcatcatg |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8353218 |
aacggtggtactgatgtgactataaagatattgtattgtggaatttgccatactgatgtccatcatg |
8353284 |
T |
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