View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5478_low_57 (Length: 275)
Name: NF5478_low_57
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_57 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 455257 - 455495
Alignment:
| Q |
1 |
ctatatctatcatcttcctcaactgcaactgccatgatcaatcttactccagcagtcacatttgttatagcaacctttgttgggtaattatatactaatc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
455257 |
ctatatctatcatcttcttcaactgcaactgccatgatcaatcttactccagcagtcacatttgttatagcaacctttgttgggtaattatatactaatc |
455356 |
T |
|
| Q |
101 |
ttactaaactcaacttaattacttttgttgagtttgaatcatttttattgaatatattacagaatggagaaagtgaatattcaaagtttgagaactatag |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
455357 |
ttactaaactcaactta----cttttgttgagtttgaatcatttttattgaatatattacagaatggagaaagtgaatattcaaagtttgagaactatag |
455452 |
T |
|
| Q |
201 |
ccaaaatagttgggacaatgatatgtgttactggagcagtgtc |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
455453 |
ccaaaatagttgggacaatgatatgtgttactggagcagtgtc |
455495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 467683 - 467779
Alignment:
| Q |
147 |
attgaatatattacagaatggagaaagtgaatattcaaagtttgagaactatagccaaaatagttgggacaatgatatgtgttactggagcagtgtc |
243 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| | |||||||||||| |
|
|
| T |
467683 |
attgattatattacagaatggaaaaagtgaatattcgaagtataagaactatagccaaaatagtggggacaattatatgtgtaagtggagcagtgtc |
467779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 246
Target Start/End: Original strand, 446673 - 446772
Alignment:
| Q |
147 |
attgaatatattacagaatggagaaagtgaatattcaaagtttgagaactatagccaaaatagttgggacaatgatatgtgttactggagcagtgtccat |
246 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||||| |||| |||||||||||||||||||||| || ||||| ||||||||| ||||||| ||||||| |
|
|
| T |
446673 |
attgattatattacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgtttgtggagcaatgtccat |
446772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 152 - 243
Target Start/End: Original strand, 474722 - 474813
Alignment:
| Q |
152 |
atatattacagaatggagaaagtgaatattcaaagtttgagaactatagccaaaatagttgggacaatgatatgtgttactggagcagtgtc |
243 |
Q |
| |
|
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| |||||| | ||||||||| ||||||| |||| |
|
|
| T |
474722 |
atatattacagaatggagaaagtcaacattcgaagtttgagaactatagccaaaatagtagggacattaatatgtgtttgtggagcattgtc |
474813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 480070 - 480157
Alignment:
| Q |
153 |
tatattacagaatggagaaagtgaatattcaaagtttgagaactatagccaaaatagttgggacaatgatatgtgttactggagcagt |
240 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||| |||||| |||||||| | | ||||||||| |
|
|
| T |
480070 |
tatattacagaatggagaaagtaaatattcgaagtatgagaactatagccaaaatagtggggacagtgatatgtataagtggagcagt |
480157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 474565 - 474636
Alignment:
| Q |
1 |
ctatatctatcatcttcctcaactgcaactgccatgatcaatcttactccagcagtcacatttgttatagca |
72 |
Q |
| |
|
||||||||||| ||||| |||| ||||| |||||||| |||||||| ||| ||||||||||||||||||||| |
|
|
| T |
474565 |
ctatatctatcttcttcttcaattgcaagtgccatgaccaatcttattcctgcagtcacatttgttatagca |
474636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 446531 - 446609
Alignment:
| Q |
1 |
ctatatctatcatcttcctcaactgcaactgccatgatcaatcttactccagcagtcacatttgttatagcaacctttg |
79 |
Q |
| |
|
||||||||||| ||| | |||| ||||| |||||||| |||||||| ||||||| |||||||||| |||||| |||||| |
|
|
| T |
446531 |
ctatatctatcttctgcttcaattgcaagtgccatgaacaatcttattccagcaatcacatttgtaatagcagcctttg |
446609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 479948 - 479990
Alignment:
| Q |
48 |
tccagcagtcacatttgttatagcaacctttgttgggtaatta |
90 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
479948 |
tccagcagtcacatttgtaatagcagcctttgtagggtaatta |
479990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 27491653 - 27491562
Alignment:
| Q |
151 |
aatatattacagaatggagaaagtgaatattcaaagtttgagaactatagccaaaatagttgggacaatgatatgtgttactggagcagtgt |
242 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||| | || ||||| ||| |||| | ||||||||||| |
|
|
| T |
27491653 |
aatattttacagaatggagcaagtgaatattagaagtttgagaactatagccaaaataataggaacaattataggtgtaagtggagcagtgt |
27491562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University