View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5478_low_6 (Length: 645)

Name: NF5478_low_6
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5478_low_6
NF5478_low_6
[»] chr4 (9 HSPs)
chr4 (275-639)||(14178691-14179056)
chr4 (275-639)||(14173937-14174302)
chr4 (275-639)||(28611568-28611933)
chr4 (275-639)||(28606806-28607171)
chr4 (275-639)||(44161586-44161949)
chr4 (275-631)||(11104477-11104829)
chr4 (275-577)||(48826702-48827000)
chr4 (302-472)||(48708086-48708256)
chr4 (387-480)||(24726288-24726381)
[»] chr8 (5 HSPs)
chr8 (275-639)||(12930676-12931040)
chr8 (274-639)||(12935422-12935787)
chr8 (410-480)||(26504985-26505055)
chr8 (366-478)||(15588948-15589060)
chr8 (283-328)||(26504850-26504895)
[»] chr1 (1 HSPs)
chr1 (275-639)||(34907139-34907503)
[»] chr7 (7 HSPs)
chr7 (273-639)||(37040424-37040791)
chr7 (275-628)||(15290243-15290594)
chr7 (275-578)||(12099060-12099361)
chr7 (423-633)||(12082021-12082227)
chr7 (275-357)||(12084669-12084751)
chr7 (368-480)||(2757307-2757418)
chr7 (298-335)||(2757236-2757273)
[»] chr5 (4 HSPs)
chr5 (275-623)||(29106878-29107224)
chr5 (275-631)||(42910993-42911346)
chr5 (367-457)||(38997230-38997320)
chr5 (275-355)||(38994699-38994779)
[»] chr6 (4 HSPs)
chr6 (17-274)||(24253201-24253458)
chr6 (17-266)||(22567070-22567319)
chr6 (275-457)||(2100199-2100379)
chr6 (450-480)||(2100723-2100753)
[»] chr2 (3 HSPs)
chr2 (275-639)||(8539183-8539548)
chr2 (17-270)||(11390049-11390302)
chr2 (17-270)||(11406710-11406963)
[»] chr3 (3 HSPs)
chr3 (494-632)||(51302168-51302306)
chr3 (275-357)||(51302937-51303019)
chr3 (366-402)||(51302308-51302344)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 275 - 639
Target Start/End: Complemental strand, 14179056 - 14178691
Alignment:
Q  275 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaaca 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           ||||||    
T  14179056 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcaataaaaaaaatgaaca 14178957  T
Q  372 ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 471  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14178956 ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 14178857  T
Q  472 ccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagag 571  Q
    |||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14178856 ccactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagag 14178759  T
Q  572 atgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14178758 atgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 14178691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 275 - 639
Target Start/End: Complemental strand, 14174302 - 14173937
Alignment:
Q  275 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaaca 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||            ||||||    
T  14174302 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagtgataaaaaaaatgaaca 14174203  T
Q  372 ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 471  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174202 ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 14174103  T
Q  472 ccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagag 571  Q
    |||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14174102 ccactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagag 14174005  T
Q  572 atgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14174004 atgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 14173937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 275 - 639
Target Start/End: Original strand, 28611568 - 28611933
Alignment:
Q  275 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaaca 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           ||||||    
T  28611568 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaatgaaca 28611667  T
Q  372 ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 471  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611668 ccaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 28611767  T
Q  472 ccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagag 571  Q
    |||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28611768 ccactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagag 28611865  T
Q  572 atgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28611866 atgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 28611933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 275 - 639
Target Start/End: Original strand, 28606806 - 28607171
Alignment:
Q  275 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaaca 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           | ||||    
T  28606806 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaattaaca 28606905  T
Q  372 ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 471  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28606906 ccaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 28607005  T
Q  472 ccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagag 571  Q
    |||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28607006 ccactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagag 28607103  T
Q  572 atgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28607104 atgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 28607171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 275 - 639
Target Start/End: Complemental strand, 44161949 - 44161586
Alignment:
Q  275 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaaca 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||    
T  44161949 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgataaaaaaaatgaaca 44161850  T
Q  372 ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 471  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  44161849 ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaat--tctct 44161752  T
Q  472 ccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagag 571  Q
    |||||||||            ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44161751 ccactctcttacacacaca--agagatacaatatagtgtttcccgtaagacctacttctattctaatgctattattttatagcacctagaagttatagag 44161654  T
Q  572 atgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  44161653 atgatacccacccggtgtatttttcccacactctctggatttactcaacactctattattcctctcac 44161586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 275 - 631
Target Start/End: Complemental strand, 11104829 - 11104477
Alignment:
Q  275 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacca 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||        |||||||||    
T  11104829 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagctgtagcgataaaaatgaacacca 11104730  T
Q  375 atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 474  Q
    ||||||||| | ||||| |||||||||  ||||| ||| |||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||    
T  11104729 atatttaacatagaaaatcctctaatatcgagggtaaa-ccacgggacaaactccgaaaaatattccaccatatctaagaatattacaatattctctcca 11104631  T
Q  475 ctctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg 574  Q
    ||||||            ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||| |||||||||||||||||||||    
T  11104630 ctctcttacacacaa---agagatacaatatagtgtttcccgtgagacccactcctattcaaatgctattattttataacacctagaagttatagagatg 11104534  T
Q  575 atacccacccggtgtatttttcccacactctctggatttactcaacactctattttt 631  Q
    ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11104533 atatccacccggtgtatttttcctacactctctggatttactcaacactctattttt 11104477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 275 - 577
Target Start/End: Original strand, 48826702 - 48827000
Alignment:
Q  275 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnnt-gaacacc 373  Q
    ||||||| |||||||||||||||||| |||||||||||||| |||||| |||  |||||||||||||||||||||||||||||          |||||||    
T  48826702 tgttgggatcgacgagcttaacgcaattgtaaattaaaatttcaaaattcaa--gagattggatcttgcagcgcagcggtagcgatagaaaaagaacacc 48826799  T
Q  374 aatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcc 473  Q
    |||||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  48826800 aatatttaacgtggaaaatcctctaataccgagggaaaaatcacgggacaa-ctccgaaaaatattccactatattaaagaatattacaatattctcttc 48826898  T
Q  474 actctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 573  Q
     ||||||            |||||||||||||||||||||||||||||   ||| |||||  ||||||||||| ||||||||||||||||||||||||||    
T  48826899 gctctct--tacacacacaagagatacaatatagtgtttcccgtgagattcactcctatttgaatgctattattttatagcacctagaagttatagagat 48826996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 302 - 472
Target Start/End: Original strand, 48708086 - 48708256
Alignment:
Q  302 tgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacaccaatatttaacgtggaaaaccctctaata 401  Q
    |||||||||||||||||||||  |||||| |||| ||||| || ||||| ||| ||        | || ||||||||||||| || ||||| || |||||    
T  48708086 tgtaaattaaaattccaaaatataaaagaaattgaatcttacaacgcagtggtggcgataaaattaaataccaatatttaacatgaaaaactctataata 48708185  T
Q  402 ctgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 472  Q
    || || ||||||||||| |||||||||| ||||||||| || ||||||||| |||||||||||||||||||    
T  48708186 ctaagagaaaaaccacgtgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc 48708256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 387 - 480
Target Start/End: Original strand, 24726288 - 24726381
Alignment:
Q  387 gaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 480  Q
    ||||||| |||||||   |||||||| ||||| ||||||||| ||||||||||||| |||||||||||| || | ||||||||||||| |||||    
T  24726288 gaaaaccatctaatatcaagggaaaagccacgagacaaactctgaaaaatattccattatattaaagaacataataatattctctccattctct 24726381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 275 - 639
Target Start/End: Complemental strand, 12931040 - 12930676
Alignment:
Q  275 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn--tgaacac 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          |||||||    
T  12931040 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaatgaacac 12930941  T
Q  373 caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 472  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12930940 caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 12930841  T
Q  473 cactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga 572  Q
    ||||||||            |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  12930840 cactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttatagaga 12930743  T
Q  573 tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 639  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12930742 tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 12930676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 274 - 639
Target Start/End: Complemental strand, 12935787 - 12935422
Alignment:
Q  274 ctgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn--tgaaca 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||          ||||||    
T  12935787 ctgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaattcaaaagaaactggatcttgcagcgcagcggtagcgataaaaaaatgaaca 12935688  T
Q  372 ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 471  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12935687 ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 12935588  T
Q  472 ccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagag 571  Q
    |||||||||            |||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||    
T  12935587 ccactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttttactctaatgctattattttatagcacctagaagttatagag 12935490  T
Q  572 atgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12935489 atgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 12935422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 410 - 480
Target Start/End: Original strand, 26504985 - 26505055
Alignment:
Q  410 aaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 480  Q
    |||||||| | ||||||||| |||||||||| |||||| |||| |||||||||||||||| || |||||||    
T  26504985 aaaaccacagtacaaactccaaaaaatattcaactataataaaaaatattacaatattctttcaactctct 26505055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 478
Target Start/End: Complemental strand, 15589060 - 15588948
Alignment:
Q  366 tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaata 465  Q
    |||||| |||||||||   || ||||||||||| || |||| |||||| || | |||||||||  ||||||||| |||| ||| ||| |||||||||| |    
T  15589060 tgaacatcaatatttattttgaaaaaccctctattaatgagagaaaaatcaagtgacaaactctaaaaaatatttcactttatcaaacaatattacaaca 15588961  T
Q  466 ttctctccactct 478  Q
    || ||||||||||    
T  15588960 ttttctccactct 15588948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 26504850 - 26504895
Alignment:
Q  283 tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 328  Q
    |||||||| |||| | ||||||||||||||||| ||||||||||||    
T  26504850 tcgacgagtttaatggaagtgtaaattaaaatttcaaaatccaaaa 26504895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 275 - 639
Target Start/End: Complemental strand, 34907503 - 34907139
Alignment:
Q  275 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn--tgaacac 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          |||||||    
T  34907503 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaatgaacac 34907404  T
Q  373 caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 472  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34907403 caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 34907304  T
Q  473 cactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga 572  Q
    ||||||||            |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  34907303 cactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttatagaga 34907206  T
Q  573 tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 639  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34907205 tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 34907139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 273 - 639
Target Start/End: Original strand, 37040424 - 37040791
Alignment:
Q  273 tctgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaa 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||           ||||    
T  37040424 tctgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaaagactggatcttgcagcgcagcggtagcgataaaaaaaatgaa 37040523  T
Q  370 caccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattct 469  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37040524 caccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatatttt 37040623  T
Q  470 ctccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatag 569  Q
    |||||||||||            |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37040624 ctccactctctcacacacaca--agagatacaatatagtgttttccgtgagacctacttctattctaatgctattattttatagcacctagaagttatag 37040721  T
Q  570 agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 639  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37040722 agatgatacccacccgatgtatttttcccacactctctggatttactcaacactctatttttcctctcac 37040791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 275 - 628
Target Start/End: Complemental strand, 15290594 - 15290243
Alignment:
Q  275 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa-gagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaac 370  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||  ||||           |||||    
T  15290594 tgttgggctcgacgagcttaacgcaattgtaaattaaaatttcaaaatccaaaaagagattggatcttgcagcgcagccttagcgataaaaaaaatgaac 15290495  T
Q  371 accaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 470  Q
    |||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||| || |||||||||||| ||||||||||||||||||||    
T  15290494 accaatatttaacgtggaaaaccctctaataccgaggtataaaccacgggacaaactccaaaagattttccactatatttaagaatattacaatattctc 15290395  T
Q  471 tccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttataga 570  Q
    ||||||||||            |||||||||||||||||||| |||||||||| ||| |||||| ||||||||  ||||  |||||||||||||||||||    
T  15290394 tccactctct--tacacacacaagagatacaatatagtgttt-ccgtgagacccactcctattcgaatgctat--tatttcagcacctagaagttataga 15290300  T
Q  571 gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatt 628  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||    
T  15290299 gatgatacccacccggtgtattttt-ccacactttctggatttagtcaacactctatt 15290243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 275 - 578
Target Start/End: Complemental strand, 12099361 - 12099060
Alignment:
Q  275 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacca 374  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| || || ||||        |||| | ||    
T  12099361 tgttgggctcgacgagtttaacgcgagtgtaaattaaaattccaaaatccaaaagagatatgatcttgcagctcaccgatagcgataaaaatgaaaagca 12099262  T
Q  375 atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 474  Q
    |||||| ||||| |||||||||||||   || |||||||||| ||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||    
T  12099261 atattttacgtgaaaaaccctctaatgacgaaggaaaaaccaagggacaaactccgaaaaaatttcaactatattaaagaatattacaatattctctcca 12099162  T
Q  475 ctctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg 574  Q
    ||||||            ||||| ||||||| |||||||  |||||||  ||| |||||| |||| |||||| ||||| |||||| ||||||||||||||    
T  12099161 ctctct--tacacgcacaagagacacaatattgtgtttctagtgagactcactcctattcaaatgatattattttataacacctaaaagttatagagatg 12099064  T
Q  575 atac 578  Q
    ||||    
T  12099063 atac 12099060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 423 - 633
Target Start/End: Complemental strand, 12082227 - 12082021
Alignment:
Q  423 aaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagac 522  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||            |||||||||||||||||||||   ||||||    
T  12082227 aaactccaaaaaatattccactatattaa-gaatattacaatattttctccactctcttacacggaaa--agagatacaatatagtgtttctaatgagac 12082131  T
Q  523 ctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacac 622  Q
       || |||||| |||| |||||| ||||||| |||||||||||||||||| ||||| ||||| | |||||||||| |  | ||||||||||| ||||||    
T  12082130 tcgctcctattcaaatgttattattttatagcgcctagaagttatagagataatacctacccgatatatttttccc-ctttttctggatttacccaacac 12082032  T
Q  623 tctatttttct 633  Q
    |||| ||||||    
T  12082031 tctaattttct 12082021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 275 - 357
Target Start/End: Complemental strand, 12084751 - 12084669
Alignment:
Q  275 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc 357  Q
    |||||||||| ||||||||||| | || ||||||||||||| |||||||||| ||| ||||||||||| |||||| |||||||    
T  12084751 tgttgggctcaacgagcttaacacgagggtaaattaaaatttcaaaatccaatagacattggatcttgtagcgcaacggtagc 12084669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 368 - 480
Target Start/End: Original strand, 2757307 - 2757418
Alignment:
Q  368 aacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatatt 467  Q
    |||||||||||||||  || ||| |||| |||| || | |||||||||| | |||||| |  ||||| |||||||||||||| || |||||| || ||||    
T  2757307 aacaccaatatttaatatgaaaacccctttaatgcttaaggaaaaaccatgagacaaattttgaaaa-tattccactatatttaaaaatattgcactatt 2757405  T
Q  468 ctctccactctct 480  Q
    |||||||||||||    
T  2757406 ctctccactctct 2757418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 335
Target Start/End: Original strand, 2757236 - 2757273
Alignment:
Q  298 caagtgtaaattaaaattccaaaatccaaaagagattg 335  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  2757236 caagtgtaaattaaaattccaaaattcaaaagaaattg 2757273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 275 - 623
Target Start/End: Original strand, 29106878 - 29107224
Alignment:
Q  275 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacca 374  Q
    ||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||        |||||||||    
T  29106878 tgttgggatcgaggagcttaatgcaagtgtaaattaaaattccaaaatccaaaaaagattggatcttgcagcgcagcggtagcgttaaaaatgaacacca 29106977  T
Q  375 atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 474  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29106978 atatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 29107077  T
Q  475 ctctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg 574  Q
    ||||||            |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||    
T  29107078 ctctct--tacacacacaagagatacaa-atagtgtttcccgtgagacctacttctattctaatgctattattttttagcacctagaagttataaagatg 29107174  T
Q  575 ata-cccacccggtgtatttttcccacactctctggatttactcaacact 623  Q
    ||| |||||||  |||||||||||||||||||||||||||||||||||||    
T  29107175 ataccccacccaatgtatttttcccacactctctggatttactcaacact 29107224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 275 - 631
Target Start/End: Original strand, 42910993 - 42911346
Alignment:
Q  275 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacca 374  Q
    ||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||| |||||||||||||||||| | |        |||||||||    
T  42910993 tgttgggctcgacgagcttaacgcaagtggaaattaaaattttaaaatccaaaagagattagatcttgcagcgcagcggcaacgataaaaatgaacacca 42911092  T
Q  375 atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 474  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  42911093 atatttaacatggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaa-tattccactatatttaagaatattacaatattctctcca 42911191  T
Q  475 ctctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg 574  Q
    ||||||            | ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  42911192 ctctctcacacacaca--aaagatacaatatagtgtttcccttgagacctacttctattctaatgctattattttatagcaccaagaagttatagagatg 42911289  T
Q  575 atacccacccggtgtatttttcccacactctctggatttactcaacactctattttt 631  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  42911290 atacccacccagtgtattttttccacactctctggatttactcaacactctattttt 42911346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 367 - 457
Target Start/End: Original strand, 38997230 - 38997320
Alignment:
Q  367 gaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 457  Q
    ||||| |||||||| |||| |||||||||||||||  ||  ||||||| |||||||||||||| ||||||| |||| ||||||||||||||    
T  38997230 gaacagcaatattttacgtcgaaaaccctctaatatcgaacgaaaaactacgggacaaactccaaaaaataatccattatattaaagaata 38997320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 38994699 - 38994779
Alignment:
Q  275 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggta 355  Q
    ||||||||| ||||| ||||| || |||||||||||||||||||||| |||||  | |||||||||||||| |||||||||    
T  38994699 tgttgggcttgacgatcttaatgctagtgtaaattaaaattccaaaacccaaacaaaattggatcttgcagtgcagcggta 38994779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 24253458 - 24253201
Alignment:
Q  17 acttggtacttttcgaggatctggtgaagctccttgaattcttcagccacttctttcttagcttgcttagtttgtacctgacgagtgtcttcccctactt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  24253458 acttggtacttttcgaggatctggtgaagctccttgaattcttcagctacttctttctttgcttgcttagtttgtgcctgacgagtgtcttcccctactt 24253359  T
Q  117 caatagtgttgatatgctcttatttttcagttggttttggctcctgcggctcctgctgcttacgatctatttccttctgaaactcgaggtatcctggttc 216  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24253358 caatagcgttgatatgctcttattttccagttggttttggctcctgcggctcctgccgcttacgatctatttccttctgaaactcgaggtatcctggttc 24253259  T
Q  217 catctcatgtttatccacaaaggatgttgtcaccgtcaccttcttgaatagtgatatc 274  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24253258 catctcctgtttatccacaaaggatgttgtcaccttcaccttcttgaatagtgatatc 24253201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 22567319 - 22567070
Alignment:
Q  17 acttggtacttttcgaggatctggtgaagctccttgaattcttcagccacttctttcttagcttgcttagtttgtacctgacgagtgtcttcccctactt 116  Q
    |||||||| ||||||||||||||||||||||||||||| || ||| | | ||||||||| || | |||| ||| | |||| |||||||||||||||||||    
T  22567319 acttggtatttttcgaggatctggtgaagctccttgaactcgtcatctaattctttctttgcctacttaatttctgcctggcgagtgtcttcccctactt 22567220  T
Q  117 caatagtgttgatatgctcttatttttcagttggttttggctcctgcggctcctgctgcttacgatctatttccttctgaaactcgaggtatcctggttc 216  Q
    ||||||  ||||| ||||| | |||| ||||||||||||  | |||| |||||||||||||  |||||| ||||||||||||||||||||||| ||||||    
T  22567219 caatagcattgatctgctcatcttttccagttggttttgatttctgcagctcctgctgcttgagatctacttccttctgaaactcgaggtatcttggttc 22567120  T
Q  217 catctcatgtttatccacaaaggatgttgtcaccgtcaccttcttgaata 266  Q
    | ||||  |||| |||||||| ||||||||||||||||||||||||||||    
T  22567119 cttctctagtttctccacaaatgatgttgtcaccgtcaccttcttgaata 22567070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 275 - 457
Target Start/End: Original strand, 2100199 - 2100379
Alignment:
Q  275 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattgga-tcttgcagcgcagcggtagcnnnnnnnntgaacacc 373  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| || | ||||||| || || ||          |||||| |    
T  2100199 tgttgggctcgacgagcttaacacaagtgtaaattaaaattccaaaattcataagagatttgaattttgcagcacaacgataatgataaaattgaacatc 2100298  T
Q  374 aatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 457  Q
    ||||||||| |||||||||||| ||||| |||| |||||||   ||| ||||||||||||||||||||||||||||||||||||    
T  2100299 aatatttaaggtggaaaaccctttaataatgagcgaaaaac---ggggcaaactccgaaaaatattccactatattaaagaata 2100379  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 450 - 480
Target Start/End: Original strand, 2100723 - 2100753
Alignment:
Q  450 aaagaatattacaatattctctccactctct 480  Q
    |||||||||||||||||||||||||||||||    
T  2100723 aaagaatattacaatattctctccactctct 2100753  T

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Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 275 - 639
Target Start/End: Complemental strand, 8539548 - 8539183
Alignment:
Q  275 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn-tgaacacc 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |         |||||| |    
T  8539548 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaattctaaaagagattggatcttgcagcgcagcggtaacaataaaaaatgaacatc 8539449  T
Q  374 aatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcc 473  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||    
T  8539448 aatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaagatattccactatatttaagaatattacaatattatctcc 8539349  T
Q  474 actctctnnnnnnnnnnnnagagatacaa---tatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttataga 570  Q
    |||||||            ||||||||||   |||||||||| |||||||||| ||| |||||| | ||||||||| ||| |||||||| ||||||||||    
T  8539348 actctct--tacacacacaagagatacaatattatagtgttt-ccgtgagacccactcctattcgattgctattattttacagcacctaaaagttataga 8539252  T
Q  571 gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 639  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||||| |||||| |||||||| ||||||    
T  8539251 gatgatacccatccgatgtatttttcccacactctctgaatttactgaacactatatttttcctctcac 8539183  T

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Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 11390049 - 11390302
Alignment:
Q  17 acttggtacttttcgaggatctggtgaagctccttgaattcttcagccacttctttcttagcttgcttagtttgtacctgacgagtgtcttcccctactt 116  Q
    |||| ||| ||||||||||||||||| ||||||||||| | ||| || ||||||||||| || |||||| ||| |||||||| |||||||||||||||||    
T  11390049 actttgtatttttcgaggatctggtggagctccttgaagttttccgctacttctttctttgcctgcttaatttctacctgacaagtgtcttcccctactt 11390148  T
Q  117 caatagtgttgatatgctcttatttttcagttggttttggctcctgcggctcctgctgcttacgatctatttccttctgaaactcgaggtatcctggttc 216  Q
    ||||| ||||||||||||||| ||||  |||||||||||  |  ||| |||||| | | ||  |||||| |||||| ||||| || |||||| |||||||    
T  11390149 caataatgttgatatgctcttcttttctagttggttttgatttatgcagctcctaccgttttagatctacttccttatgaaaatcaaggtattctggttc 11390248  T
Q  217 catctcatgtttatccacaaaggatgttgtcaccgtcaccttcttgaatagtga 270  Q
    | |||   |||| ||||||||||||||| ||||  ||||||| ||||| |||||    
T  11390249 cttctgtagtttctccacaaaggatgttttcactttcacctttttgaacagtga 11390302  T

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Target: chr2; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 11406710 - 11406963
Alignment:
Q  17 acttggtacttttcgaggatctggtgaagctccttgaattcttcagccacttctttcttagcttgcttagtttgtacctgacgagtgtcttcccctactt 116  Q
    |||| ||| ||||||||||||||||| ||||||||||| | ||| || ||||||||||| || |||||| ||| |||||||| |||||||||||||||||    
T  11406710 actttgtatttttcgaggatctggtggagctccttgaagttttccgctacttctttctttgcctgcttaatttctacctgacaagtgtcttcccctactt 11406809  T
Q  117 caatagtgttgatatgctcttatttttcagttggttttggctcctgcggctcctgctgcttacgatctatttccttctgaaactcgaggtatcctggttc 216  Q
    ||||| ||||||||||||||| ||||  |||||||||||  |  ||| |||||| | | ||  |||||| |||||| ||||| || |||||| |||||||    
T  11406810 caataatgttgatatgctcttcttttctagttggttttgatttatgcagctcctaccgttttagatctacttccttatgaaaatcaaggtattctggttc 11406909  T
Q  217 catctcatgtttatccacaaaggatgttgtcaccgtcaccttcttgaatagtga 270  Q
    | |||   |||| ||||||||||||||| ||||  ||||||| ||||| |||||    
T  11406910 cttctgtagtttctccacaaaggatgttttcactttcacctttttgaacagtga 11406963  T

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Target: chr3 (Bit Score: 99; Significance: 2e-48; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 494 - 632
Target Start/End: Complemental strand, 51302306 - 51302168
Alignment:
Q  494 gagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtattt 593  Q
    |||||||||||||||||||||||||||||| ||| |||||| ||||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||    
T  51302306 gagatacaatatagtgtttcccgtgagacccactcctattcgaatgcaattgttttatagcacctagaagttatagagatgattcccacccggtgtattt 51302207  T
Q  594 ttcccacactctctggatttactcaacactctatttttc 632  Q
    |  ||||||||||||||||||||||| ||||||||||||    
T  51302206 tatccacactctctggatttactcaatactctatttttc 51302168  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 275 - 357
Target Start/End: Complemental strand, 51303019 - 51302937
Alignment:
Q  275 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc 357  Q
    ||||||| ||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  51303019 tgttgggatcgacgagcttaatgcaagtgtaaattaaaatttcaaaatccaaaacagattggatcttgcagcgcagcggtagc 51302937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 402
Target Start/End: Complemental strand, 51302344 - 51302308
Alignment:
Q  366 tgaacaccaatatttaacgtggaaaaccctctaatac 402  Q
    |||||||||||||||||||||||||||||||||||||    
T  51302344 tgaacaccaatatttaacgtggaaaaccctctaatac 51302308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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