View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_60 (Length: 268)
Name: NF5478_low_60
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 26621844 - 26621588
Alignment:
| Q |
14 |
atattagtaaaaggaaatgaagaaagaatacttgggtggactagaccaaaactgaaggatgcacaaaagaagcataatcaattgtctt---attaaaaac |
110 |
Q |
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| T |
26621844 |
atattagtaaaaggaaatgaagaaagaatactcgggtggactagaccaaaactgaaggatgcataaaagaagcataatcaattgtcttataattaaaaac |
26621745 |
T |
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| Q |
111 |
cttacctataaaacttactgagataaaaccaaggtgaagagaaaacgagtgtag-----------------aagttagcaaaatttatgctaaggtagat |
193 |
Q |
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| T |
26621744 |
cttacctataaaacttactgagataaaaccaaggtgaagagaaaccgagtgtagtgctcaacccaaacaaaaagttagcaaaatttatgctaaggtagat |
26621645 |
T |
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| Q |
194 |
caattcattcatagtaaataaattcaagaaactatgaggaatagcctcccaccattg |
250 |
Q |
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| T |
26621644 |
caattcattcatagtaaatacattcaagaaactatgaggaatagcctcccaccattg |
26621588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 26609283 - 26609032
Alignment:
| Q |
14 |
atattagtaaaaggaaatgaagaaagaatacttgggtggactagaccaaaactgaaggatgcacaaaagaagcataatcaattgtcttattaaaaacctt |
113 |
Q |
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| T |
26609283 |
atattagtaaaaggaaacaaagaaacaatactcgggtggactatgtcaaagcccaatgatgcacaaaagatgcataatcaattgtcttattaaaaacctt |
26609184 |
T |
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| Q |
114 |
acctataaaacttactgagataaaaccaaggtgaagagaaaacgagtgt---------------agaagttagcaaaatttatgctaaggtagatcaatt |
198 |
Q |
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| T |
26609183 |
atctgtaaaatttagtgggataaaaccaaggtgaagagaaaacgagtgtaatgctcaacaaataaaaagttaacaaaatttatgctcaggtagatcaatt |
26609084 |
T |
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| Q |
199 |
cattcatagtaaataaattcaagaaactatgaggaatagcctcccaccattg |
250 |
Q |
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| T |
26609083 |
atttcgtagtaaatacattcaagatattatgaggaatagcctcccaccattg |
26609032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 26619694 - 26619603
Alignment:
| Q |
165 |
aagttagcaaaatttatgctaaggtagatcaattcattcatagtaaataaattcaag------aaactatgaggaatagcctcccaccattg |
250 |
Q |
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| T |
26619694 |
aagttaactaaatttatgctcaggtagatcaattctttcgtagtaaatacattcaagataataatactatgaggaatagcctcccaccattg |
26619603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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