View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5478_low_62 (Length: 265)

Name: NF5478_low_62
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5478_low_62
NF5478_low_62
[»] scaffold0257 (1 HSPs)
scaffold0257 (13-265)||(23518-23770)
[»] chr5 (2 HSPs)
chr5 (16-265)||(15304965-15305214)
chr5 (94-132)||(31485620-31485658)
[»] chr6 (1 HSPs)
chr6 (13-265)||(19996465-19996717)
[»] chr1 (10 HSPs)
chr1 (13-136)||(41959129-41959252)
chr1 (145-265)||(3943541-3943661)
chr1 (13-136)||(13984870-13984993)
chr1 (145-265)||(13984544-13984664)
chr1 (13-136)||(3943111-3943234)
chr1 (145-265)||(9589409-9589529)
chr1 (145-265)||(41959587-41959707)
chr1 (13-136)||(9588721-9588844)
chr1 (13-132)||(44228112-44228230)
chr1 (13-102)||(1168412-1168499)
[»] chr8 (8 HSPs)
chr8 (145-265)||(45278155-45278275)
chr8 (13-134)||(10646643-10646764)
chr8 (145-265)||(10647072-10647192)
chr8 (145-265)||(41305905-41306025)
chr8 (13-136)||(8697777-8697900)
chr8 (13-136)||(40486332-40486455)
chr8 (13-136)||(41307840-41307963)
chr8 (13-136)||(45278580-45278703)
[»] chr3 (15 HSPs)
chr3 (145-265)||(44276918-44277038)
chr3 (13-136)||(12094633-12094756)
chr3 (13-136)||(44277334-44277457)
chr3 (145-265)||(19911952-19912072)
chr3 (13-136)||(19911560-19911683)
chr3 (145-265)||(12095201-12095321)
chr3 (13-121)||(38805296-38805404)
chr3 (17-132)||(40931677-40931792)
chr3 (13-115)||(4226757-4226856)
chr3 (13-115)||(4235801-4235900)
chr3 (204-265)||(38806178-38806239)
chr3 (199-239)||(4236415-4236455)
chr3 (199-239)||(4227369-4227409)
chr3 (106-136)||(38805395-38805425)
chr3 (107-136)||(19911693-19911722)
[»] chr2 (2 HSPs)
chr2 (145-265)||(34222201-34222321)
chr2 (13-136)||(34224257-34224380)
[»] chr7 (4 HSPs)
chr7 (145-265)||(25059593-25059713)
chr7 (13-136)||(2911427-2911550)
chr7 (13-136)||(25060012-25060135)
chr7 (145-265)||(2911002-2911122)
[»] chr4 (4 HSPs)
chr4 (13-132)||(19361698-19361817)
chr4 (13-132)||(20541512-20541635)
chr4 (197-265)||(19362019-19362087)
chr4 (205-265)||(20543325-20543385)


Alignment Details
Target: scaffold0257 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 23518 - 23770
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23518 aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac 23617  T
Q  113 caataccaaaattaattaaattcatgggaaaataattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagag 212  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23618 caataccaaaattaattaaattcataggaaaataattaggagtggttagttacgatggattagagtgcaatagtcatgggaaaataatttcttgggagag 23717  T
Q  213 tgcatgaataaatctacttaaaattgggtcaacatttattagtggaaaataat 265  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  23718 tgcatgagtaaatctacttaaaattgggtcaatatttattagtggaaaataat 23770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 15305214 - 15304965
Alignment:
Q  16 gacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaataccaa 115  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15305214 gacaagcaagtttgacacaaaagttcctattatacccttgtctttgatttcatccattttacatttatttaccccatctcataattactcccaataccaa 15305115  T
Q  116 taccaaaattaattaaattcatgggaaaataattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgc 215  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15305114 taccaaaattaattaaattcatgggaaaataatttggagtagttagttacgatggattagagtgcaatagtcatgggaaaataatttcttgggagagtgc 15305015  T
Q  216 atgaataaatctacttaaaattgggtcaacatttattagtggaaaataat 265  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15305014 atgagtaaatctacttaaaattgggtcaacatttattagtggaaaataat 15304965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 31485620 - 31485658
Alignment:
Q  94 tcataattactcccaataccaataccaaaattaattaaa 132  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  31485620 tcataattacttcgaataccaataccaaaattaattaaa 31485658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 19996717 - 19996465
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19996717 aaggacaagctagtttgacacaaaagttcctattatacctttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac 19996618  T
Q  113 caataccaaaattaattaaattcatgggaaaataattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagag 212  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19996617 caataccaaaattaattaaattcataggaaaataattaggagtggttagttacgatggattagagtgcaatagtcatgggaaaataatttcttgggagag 19996518  T
Q  213 tgcatgaataaatctacttaaaattgggtcaacatttattagtggaaaataat 265  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  19996517 tgcatgagtaaatctacttaaaattgggtcaatatttattagtggaaaataat 19996465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 41959129 - 41959252
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41959129 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac 41959228  T
Q  113 caataccaaaattaattaaattca 136  Q
    ||||||||||||||||||||||||    
T  41959229 caataccaaaattaattaaattca 41959252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 3943541 - 3943661
Alignment:
Q  145 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3943541 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaa 3943640  T
Q  245 catttattagtggaaaataat 265  Q
    |||||||||||||||||||||    
T  3943641 catttattagtggaaaataat 3943661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 13984993 - 13984870
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13984993 aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac 13984894  T
Q  113 caataccaaaattaattaaattca 136  Q
    ||||||||||||||||||||||||    
T  13984893 caataccaaaattaattaaattca 13984870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 13984664 - 13984544
Alignment:
Q  145 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  13984664 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattggatcaa 13984565  T
Q  245 catttattagtggaaaataat 265  Q
    |||||||||||||||||||||    
T  13984564 catttattagtggaaaataat 13984544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 3943111 - 3943234
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3943111 aaggacaagctaatttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac 3943210  T
Q  113 caataccaaaattaattaaattca 136  Q
    ||||||||||||||||||||||||    
T  3943211 caataccaaaattaattaaattca 3943234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 9589409 - 9589529
Alignment:
Q  145 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||    
T  9589409 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcaggagtaaatctacttaaaattaggtcaa 9589508  T
Q  245 catttattagtggaaaataat 265  Q
    |||||||||||||||||||||    
T  9589509 catttattagtggaaaataat 9589529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 41959587 - 41959707
Alignment:
Q  145 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| |||||    
T  41959587 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttggaagagtgtatgagtaaatctacttaaaattgagtcaa 41959686  T
Q  245 catttattagtggaaaataat 265  Q
    |||||||||||||||||||||    
T  41959687 catttattagtggaaaataat 41959707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 9588721 - 9588844
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    |||||||| ||| |||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  9588721 aaggacaatctattttgacacaaaagttcctattatacccttgtctttgattttctccattttacatttatttaccccatctcataattactcccaatac 9588820  T
Q  113 caataccaaaattaattaaattca 136  Q
    ||||||||||||||||||||||||    
T  9588821 caataccaaaattaattaaattca 9588844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 44228230 - 44228112
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    ||||||||||||| | |||| |||||||| |||||||||||||| ||| | ||||| ||||||||||||||||||||||||| ||||| ||| |||||||    
T  44228230 aaggacaagctagct-gacataaaagttcctattatacccttgttttttatttccttcattttacatttatttaccccatctaataatcacttccaatac 44228132  T
Q  113 caataccaaaattaattaaa 132  Q
    |||||||||| |||||||||    
T  44228131 caataccaaatttaattaaa 44228112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 1168412 - 1168499
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataatta 102  Q
    |||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||||||||||  ||||||||||||| |||||||||||    
T  1168412 aaggacaagctattttgacacaaaagttcatagtttacccttgtctttgatttcctccatttt--atttatttaccccgtctcataatta 1168499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 45278275 - 45278155
Alignment:
Q  145 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45278275 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaa 45278176  T
Q  245 catttattagtggaaaataat 265  Q
    |||||||||||||||||||||    
T  45278175 catttattagtggaaaataat 45278155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 10646643 - 10646764
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10646643 aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac 10646742  T
Q  113 caataccaaaattaattaaatt 134  Q
    ||||||||||||||||||||||    
T  10646743 caataccaaaattaattaaatt 10646764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 10647072 - 10647192
Alignment:
Q  145 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  10647072 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttaggagagtgcatgagtaaatctacttaaaattgggtcaa 10647171  T
Q  245 catttattagtggaaaataat 265  Q
    |||||||||||||||||||||    
T  10647172 catttattagtggaaaataat 10647192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 41306025 - 41305905
Alignment:
Q  145 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  41306025 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttaggagagtgcatgagtaaatctacttaaaattgggtcaa 41305926  T
Q  245 catttattagtggaaaataat 265  Q
    |||||||||||||||||||||    
T  41305925 catttattagtggaaaataat 41305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 8697900 - 8697777
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8697900 aaggacaaactagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac 8697801  T
Q  113 caataccaaaattaattaaattca 136  Q
    ||||||||||||||||||||||||    
T  8697800 caataccaaaattaattaaattca 8697777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 40486455 - 40486332
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40486455 aaggacaagctaatttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac 40486356  T
Q  113 caataccaaaattaattaaattca 136  Q
    ||||||||||||||||||||||||    
T  40486355 caataccaaaattaattaaattca 40486332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 41307963 - 41307840
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41307963 aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac 41307864  T
Q  113 caataccaaaattaattaaattca 136  Q
    ||||| ||||||||||||||||||    
T  41307863 caatatcaaaattaattaaattca 41307840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 45278703 - 45278580
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45278703 aaggacaagctaatttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac 45278604  T
Q  113 caataccaaaattaattaaattca 136  Q
    ||||||||||||||||||||||||    
T  45278603 caataccaaaattaattaaattca 45278580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 44277038 - 44276918
Alignment:
Q  145 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44277038 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaa 44276939  T
Q  245 catttattagtggaaaataat 265  Q
    |||||||||||||||||||||    
T  44276938 catttattagtggaaaataat 44276918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 12094633 - 12094756
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12094633 aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctctattttacatttatttaccccatctcataattactcccaatac 12094732  T
Q  113 caataccaaaattaattaaattca 136  Q
    ||||||||||||||||||||||||    
T  12094733 caataccaaaattaattaaattca 12094756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 44277457 - 44277334
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  44277457 aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgattttctccattttacatttatttaccccatctcataattactcccaatac 44277358  T
Q  113 caataccaaaattaattaaattca 136  Q
    ||||||||||||||||||||||||    
T  44277357 caataccaaaattaattaaattca 44277334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 19911952 - 19912072
Alignment:
Q  145 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 244  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  19911952 taattaggagtagttaattacgatggattagagtgcagtagtcatgggaaaataatttcttggaagagtgcatgagtaaatctacttaaaattgggtcaa 19912051  T
Q  245 catttattagtggaaaataat 265  Q
    |||||||||||||||||||||    
T  19912052 catttattagtggaaaataat 19912072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 19911560 - 19911683
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19911560 aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccacctcataattactcccaatac 19911659  T
Q  113 caataccaaaattaattaaattca 136  Q
    ||||||||||||||||||||||||    
T  19911660 caataccaaaattaattaaattca 19911683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 12095201 - 12095321
Alignment:
Q  145 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 244  Q
    ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  12095201 taattagaagtagttagttacgatagattagagtggagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcta 12095300  T
Q  245 catttattagtggaaaataat 265  Q
    |||||||||||||||||||||    
T  12095301 catttattagtggaaaataat 12095321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 38805296 - 38805404
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38805296 aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac 38805395  T
Q  113 caataccaa 121  Q
    |||||||||    
T  38805396 caataccaa 38805404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 40931677 - 40931792
Alignment:
Q  17 acaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaataccaat 116  Q
    ||||||||| || |||||||||||| |||||||| ||||||||||| |||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  40931677 acaagctagattaacacaaaagttcctattatactcttgtctttgatttcctccattttatgtttatttaccccatctcatagttactcccaataccaat 40931776  T
Q  117 accaaaattaattaaa 132  Q
    ||||||||||||||||    
T  40931777 accaaaattaattaaa 40931792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 4226757 - 4226856
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    |||||||| ||||||||||||||| |||| |||||||||||||| ||||| |||||||||||||  ||||||||||||||||||||||||||| ||||||    
T  4226757 aaggacaaactagtttgacacaaa-gttcctattatacccttgtgtttgatttcctccatttta--tttatttaccccatctcataattactctcaatac 4226853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 4235801 - 4235900
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    |||||||||||||||||| ||||| |||| |||||||||||||| ||||| ||||||||||||  |||||||||||| ||||||||||||||| ||||||    
T  4235801 aaggacaagctagtttgatacaaa-gttcctattatacccttgtgtttgatttcctccatttt--atttatttacccaatctcataattactctcaatac 4235897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 38806178 - 38806239
Alignment:
Q  204 ttgggagagtgcatgaataaatctacttaaaattgggtcaacatttattagtggaaaataat 265  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38806178 ttgggagagtgcatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataat 38806239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 4236415 - 4236455
Alignment:
Q  199 atttcttgggagagtgcatgaataaatctacttaaaattgg 239  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  4236415 atttcttgggagagtgcatgaataaatccacttaaaattgg 4236455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 4227369 - 4227409
Alignment:
Q  199 atttcttgggagagtgcatgaataaatctacttaaaattgg 239  Q
    ||||||||||||| |||||||||||||| ||||||||||||    
T  4227369 atttcttgggagactgcatgaataaatccacttaaaattgg 4227409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 136
Target Start/End: Original strand, 38805395 - 38805425
Alignment:
Q  106 ccaataccaataccaaaattaattaaattca 136  Q
    |||||||||||||||||||||||||||||||    
T  38805395 ccaataccaataccaaaattaattaaattca 38805425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 19911693 - 19911722
Alignment:
Q  107 caataccaataccaaaattaattaaattca 136  Q
    ||||||||||||||||||||||||||||||    
T  19911693 caataccaataccaaaattaattaaattca 19911722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 34222321 - 34222201
Alignment:
Q  145 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34222321 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaa 34222222  T
Q  245 catttattagtggaaaataat 265  Q
    |||||||||||||||||||||    
T  34222221 catttattagtggaaaataat 34222201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 34224380 - 34224257
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34224380 aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac 34224281  T
Q  113 caataccaaaattaattaaattca 136  Q
    ||||||||||||||||||||||||    
T  34224280 caataccaaaattaattaaattca 34224257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 25059713 - 25059593
Alignment:
Q  145 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  25059713 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctgcttaaaattgggtcaa 25059614  T
Q  245 catttattagtggaaaataat 265  Q
    |||||||||||||||||||||    
T  25059613 catttattagtggaaaataat 25059593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 2911550 - 2911427
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2911550 aaggacaagctaatttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac 2911451  T
Q  113 caataccaaaattaattaaattca 136  Q
    ||||||||||||||||||||||||    
T  2911450 caataccaaaattaattaaattca 2911427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 25060135 - 25060012
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25060135 aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactctcaatac 25060036  T
Q  113 caataccaaaattaattaaattca 136  Q
    ||||||||||||||||||||||||    
T  25060035 caataccaaaattaattaaattca 25060012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 2911122 - 2911002
Alignment:
Q  145 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 244  Q
    ||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||| |||| ||||||||||| ||||||||||||||||||||||||    
T  2911122 taattaggagtagttagttacgatgaattaaagtgcagtagtcattggaaaataattttttggaagagtgcatgagtaaatctacttaaaattgggtcaa 2911023  T
Q  245 catttattagtggaaaataat 265  Q
    |||||||||||||||||||||    
T  2911022 catttattagtggaaaataat 2911002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 19361698 - 19361817
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccattttacatttatttaccccatctcataattactcccaatac 112  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  19361698 aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttatatttatttaccccatctaataattactcccaatac 19361797  T
Q  113 caataccaaaattaattaaa 132  Q
    ||||||||||||||||||||    
T  19361798 caataccaaaattaattaaa 19361817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 20541512 - 20541635
Alignment:
Q  13 aaggacaagctagtttgacacaaaagttcatattataccctt----gtctttgacttcctccattttacatttatttaccccatctcataattactccca 108  Q
    |||||||| |||||| ||||||||||||| ||||||||||||    |||||||| ||||||  ||||||||||||||||| |||||||||||||||||      
T  20541512 aaggacaaactagttcgacacaaaagttcctattatacccttacttgtctttgatttcctctgttttacatttatttacctcatctcataattactcctg 20541611  T
Q  109 ataccaataccaaaattaattaaa 132  Q
    ||||||||| ||||| ||||||||    
T  20541612 ataccaatatcaaaactaattaaa 20541635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 19362019 - 19362087
Alignment:
Q  197 taatttcttgggagagtgcatgaataaatctacttaaaattgggtcaacatttattagtggaaaataat 265  Q
    |||||||| |||||||||||||| |||||| ||||||||||||||||||||||| | ||| ||||||||    
T  19362019 taatttctagggagagtgcatgagtaaatccacttaaaattgggtcaacatttactggtgtaaaataat 19362087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 20543325 - 20543385
Alignment:
Q  205 tgggagagtgcatgaataaatctacttaaaattgggtcaacatttattagtggaaaataat 265  Q
    ||||| ||||||||| |||||| |||||||||||||||||||||||||| |||||||||||    
T  20543325 tgggaaagtgcatgagtaaatccacttaaaattgggtcaacatttattaatggaaaataat 20543385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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