View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_63 (Length: 259)
Name: NF5478_low_63
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 89 - 248
Target Start/End: Complemental strand, 43612211 - 43612052
Alignment:
| Q |
89 |
agaagtgggaatttctaaaatacaagtgcctagacagaaacacatccctgtttccaagtctctgcttctagatgcaatcctctctaacatgcttcatcaa |
188 |
Q |
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| T |
43612211 |
agaagtgggaatttctaaaatacaagtgcctagacagaaacacatccctgtttccaagtcccagcttctagatgcaatcctctctaacatgcttcatcaa |
43612112 |
T |
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| Q |
189 |
gatactgctcatcactttcgccttctcacctcgtaagtactatcaatttcctatattcat |
248 |
Q |
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| T |
43612111 |
gatactgctcatcactttcgccttctcacctcgtaagtactatcaatttcctatattcat |
43612052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 43612286 - 43612235
Alignment:
| Q |
17 |
acaagaacaagtgaggcagagtgaaaaccccaacaacaagaaaaactccaag |
68 |
Q |
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| T |
43612286 |
acaagaacaagtgaggcagagtgaaaaccccaacaacaagaaaaactccaag |
43612235 |
T |
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