View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_69 (Length: 251)
Name: NF5478_low_69
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_69 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 33162634 - 33162874
Alignment:
| Q |
1 |
tagcttcatagcttcaagaggggttgttcctttatacatgagtatttcacaacggtttccnnnnnnngataacactttggatatagttcattccatgcat |
100 |
Q |
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| T |
33162634 |
tagcttcatagcttcaagaggggttcttcctttatatatgagtatttcacaacggtttccgttttttgataacactttggatatagttcattccatgcat |
33162733 |
T |
|
| Q |
101 |
gttttgagtaattggataccagaaacattgcttcattttttgttgtttgatgtttatagggttcttagacctggtgggttgttttggttggaccatttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33162734 |
gttttgagtaattggataccagaaacattgcttcattttttgttgtttgatgtttatagggttcttagacctggtgggttgttttggttggaccatttct |
33162833 |
T |
|
| Q |
201 |
tttgtgttggggatcaattggagaatgtttatggacctatg |
241 |
Q |
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| T |
33162834 |
tttgtgttggggatcaattggagaatgtttatggacctatg |
33162874 |
T |
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