View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_7 (Length: 562)
Name: NF5478_low_7
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 20 - 549
Target Start/End: Complemental strand, 549834 - 549305
Alignment:
| Q |
20 |
ttgtccaggactaagccacttaatcccatttgtagagtttgcaaaactacttgttcttcatcacaacaatttccatgtcactttcctcattccaactctt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
549834 |
ttgtccaggactaagccacttaatcccatttgtagagtttgcaaaactacttgttcttcatcacaacaatttccatgtcactttcctcattccaactctt |
549735 |
T |
|
| Q |
120 |
ggttctcctacaccatccaccaaatctatcttaaactctcttccaccaaacattgattttacattccttcctcagatcaatatccaagaccttcctccca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
549734 |
ggttctcctacaccatccaccaaatctatcttaaactctcttccaccaaacattgattttacattccttcctcagatcaatatccaagaccttcctccca |
549635 |
T |
|
| Q |
220 |
acattcacatcgcaacacaaatgaaactcacagttaaacactctatgccctatttgcatcaagaagttaacaaaatggtaacttgttcaaaaacaaactt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
549634 |
acattcacatcgcaacacaaatgaaactcacagttaaacactctataccctatttgcatcaagaagttaacaaaatcgtaacttgttcaaaaacaaactt |
549535 |
T |
|
| Q |
320 |
tgttggtttggtttttgatcttttctcaagcgatgtaatcgacatcgctaaaaaattcaaccttatgtcttatattttcgctacttcatcagttatatca |
419 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
549534 |
tgttggtttggtttttgatcttttctcaagtgatgtaatcgacatcgctaaaaaattcaaccttatgtcttatattttcgctacttcatcagttatatca |
549435 |
T |
|
| Q |
420 |
cttcaattctgtcttaatcttcccaaactagatgagagtgtttcctctgagttcatggacacaacaaaaacatttgacattccagattcaaatgtttctt |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
549434 |
cttcaattctgtcttaatcttcccaaactagatgagagtgtttcctttgagttcatggacacaacaaaaacatttgacattccagtttcaaatgtttctt |
549335 |
T |
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| Q |
520 |
ttaaggtaaaagattttcctgaccctgttc |
549 |
Q |
| |
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|||||||||| ||||||||||||||||||| |
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| T |
549334 |
ttaaggtaaatgattttcctgaccctgttc |
549305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 20 - 549
Target Start/End: Original strand, 23422794 - 23423323
Alignment:
| Q |
20 |
ttgtccaggactaagccacttaatcccatttgtagagtttgcaaaactacttgttcttcatcacaacaatttccatgtcactttcctcattccaactctt |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23422794 |
ttgtccaggactaagccacttaattccatttgtagagtttgcaaaactacttgttcttcatcacaacaatttccatgtcactttcctcattccaactctt |
23422893 |
T |
|
| Q |
120 |
ggttctcctacaccatccaccaaatctatcttaaactctcttccaccaaacattgattttacattccttcctcagatcaatatccaagaccttcctccca |
219 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
23422894 |
ggttctcctacaccatctaccaaatccatcttaaactctcttccaccaaacattgattttacattccttcctcatatcaatatccaggaccttcctccca |
23422993 |
T |
|
| Q |
220 |
acattcacatcgcaacacaaatgaaactcacagttaaacactctatgccctatttgcatcaagaagttaacaaaatggtaacttgttcaaaaacaaactt |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23422994 |
acattcacatcgcaacacaaatgaaactcacagttaaacactctataccctatttgcatcaagaagttaacaaaatggtaacttgttcaaaaacaaactt |
23423093 |
T |
|
| Q |
320 |
tgttggtttggtttttgatcttttctcaagcgatgtaatcgacatcgctaaaaaattcaaccttatgtcttatattttcgctacttcatcagttatatca |
419 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23423094 |
tgtttgtttggtttttgatcttttctcaagcgatgtaatcgacatcgctaaaaaattcaaccttatgtcttatattttcgctacttcatcagttatatca |
23423193 |
T |
|
| Q |
420 |
cttcaattctgtcttaatcttcccaaactagatgagagtgtttcctctgagttcatggacacaacaaaaacatttgacattccagattcaaatgtttctt |
519 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
23423194 |
cttcaattctgtcttaatcttcccaaactagatgagagtgtttcctttgagttcatggacacaacaaaaacatttgacattccagtttcaaatgtttctt |
23423293 |
T |
|
| Q |
520 |
ttaaggtaaaagattttcctgaccctgttc |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
23423294 |
ttaaggtaaaagattttcctgaccctgttc |
23423323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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