View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_73 (Length: 248)
Name: NF5478_low_73
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_73 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 30314341 - 30314564
Alignment:
| Q |
18 |
aattgacaccgcattggtttcattttcgcacattttatcttaatataaatgtttaaatcggaattgactaattataactgcatgcacaattttaaaccat |
117 |
Q |
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| T |
30314341 |
aattgacaccgcattggtttcattttcgcacattttatcttaatataaatgtttaaaacggaattgactaattataactgcatgcacaattttaaaccat |
30314440 |
T |
|
| Q |
118 |
ctatacatttataaccacgttttcttttctactttttcctcgatctcttaccatttatcattgttcttcctttcgaacagtctttctcattgtctggaaa |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30314441 |
ctatacatttataaccacattttcttttctactttttcatcgatctcttaccatttatcattgttcttcctttcgaacagtctttctcattgtctggaaa |
30314540 |
T |
|
| Q |
218 |
tcaaaaccaacaatccttcttctc |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
30314541 |
tcaaaaccaacaatccttcttctc |
30314564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 30303444 - 30303676
Alignment:
| Q |
18 |
aattgacaccgcattggtttcattttcgcacattttatcttaatataaatgtttaaatcggaattgactaattataactgcatgcacaattttaaaccat |
117 |
Q |
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|||||| ||||||||||| |||||||| || ||| ||||||||||||||||| | | || |||||||||||||||||||||||||||||| ||||||| |
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| T |
30303444 |
aattgataccgcattggtctcattttctcatattctatcttaatataaatgtctgtaacgtgattgactaattataactgcatgcacaatttaaaaccat |
30303543 |
T |
|
| Q |
118 |
ctatacatttataaccacgttttcttttctactttttcctcgatctcttaccatttatcattgttct---------tcctttcgaacagtctttctcatt |
208 |
Q |
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| T |
30303544 |
ctagacatatatatccacattttcttttctgctttttattcgatctcttaccatttatcattgttctgtctttgactcctttccaacagtctttctcatt |
30303643 |
T |
|
| Q |
209 |
gtctggaaatcaaaaccaacaatccttcttctc |
241 |
Q |
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|||||||| |||||||||||| ||||||||||| |
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| T |
30303644 |
gtctggaagtcaaaaccaacagtccttcttctc |
30303676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 30290930 - 30291022
Alignment:
| Q |
149 |
ctttttcctcgatctcttaccatttatcattgttcttcctttcgaacagtctttctcattgtctggaaatcaaaaccaacaatccttcttctc |
241 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30290930 |
ctttttcttcgatctcttaccatttatcattgttcttcctttccaacagtctttctcattgtctggaaatcaaaaccaacaatccttcttctc |
30291022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 30290775 - 30290902
Alignment:
| Q |
18 |
aattgacaccgcattggtttcattttcgcacattttatcttaatataaatgtttaaatcggaattgactaattataactgcatgcacaattttaaaccat |
117 |
Q |
| |
|
|||||| ||||||||||| |||| ||||||||||| |||||| ||||||||| | |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30290775 |
aattgataccgcattggtctcatcttcgcacatttgatcttatattaaatgtttgtaacggaattgactaattataactgcatgcacaatttaaaaccat |
30290874 |
T |
|
| Q |
118 |
ctatacatttataaccacgttttctttt |
145 |
Q |
| |
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|||||||| |||| |||| ||||||||| |
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|
| T |
30290875 |
ctatacatatatatccacattttctttt |
30290902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 30298437 - 30298493
Alignment:
| Q |
185 |
tcctttcgaacagtctttctcattgtctggaaatcaaaaccaacaatccttcttctc |
241 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
30298437 |
tcctttccaacagtctttctcattgtctggaagtcaaaaccaacagtccttcttctc |
30298493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 30285995 - 30286043
Alignment:
| Q |
193 |
aacagtctttctcattgtctggaaatcaaaaccaacaatccttcttctc |
241 |
Q |
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||||||||||||||||||||| || | ||||||||||||||||| |||| |
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| T |
30285995 |
aacagtctttctcattgtctgaaagtgaaaaccaacaatccttcctctc |
30286043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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