View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_8 (Length: 559)
Name: NF5478_low_8
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Original strand, 7617187 - 7617753
Alignment:
| Q |
1 |
cacagatgatatcaagagaacaattttagaatatggtttcagcattgtcaaggaaaatattgttcaacttgatgagaccactgtgaaaagattttatgca |
100 |
Q |
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| T |
7617187 |
cacagatgatatcaagagaacaattttagaatatggtttcagcattgtcaaggaaaagattgttcaacttgatgagaccactgtgaaaagattttatgca |
7617286 |
T |
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| Q |
101 |
gagcactcttcaaagaacttcttttccagccttgttaaatacatgaccaggtatcctatgattgcctcgactcttgttgcatgatggtggtatatactat |
200 |
Q |
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| T |
7617287 |
gagcactcttcaaagaacttcttttccagccttgttaaatacatgaccaggtatcctatgattgcctcgactcttgttgcatgatggtggtatatactat |
7617386 |
T |
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| Q |
201 |
atcggtcttaatttgcggctgcagttacactatgaacctttatattgtggtaaaatgttggtaaatgtggccacaactgtggttgcggagacctctaaac |
300 |
Q |
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| T |
7617387 |
atcggtcttaatttgcggctgcagttacactatgaacctttatattgtggtaaaatgttggtaaatgtggccacaactgcggttgcggagacctctaaac |
7617486 |
T |
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| Q |
301 |
ccgctatattgcagttgaagactgcagtttataactatttcctaaactgtttcgcaaaccgcattatgttgactgctt--------------------ga |
380 |
Q |
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| T |
7617487 |
ccgctatattgcagttgaagactgcaatttataactatttcctaaactgtttcgcaaaccgcattatgttgactgcttgttggattgtctatttgctaga |
7617586 |
T |
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| Q |
381 |
ccaacttttacatagttttctttgcttgacaatgataaaataacttcaatttattttctcagtggtatttattcaatgattttcgctcatcatctcttta |
480 |
Q |
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| T |
7617587 |
ccaacttttacatagttttctttgcttgacaatgataaaataacttcaatttattttctcagtggtatttatttaatgattttcgctcatcatctcttta |
7617686 |
T |
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| Q |
481 |
atttttatccattcattcattaaagcatttcatgtagttggtcaagattaaggccaaactcaattca |
547 |
Q |
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| T |
7617687 |
atttttatccattcattcattaaagcatttcatgtagttggtcaagattaaggccaaactcatttca |
7617753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 14337131 - 14337187
Alignment:
| Q |
282 |
gttgcggagacctctaaacccgctatattgcagttgaagactgcagtttataactat |
338 |
Q |
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| T |
14337131 |
gttgcggagacctctaaaaccattatattgcggttgcagaccgcagtttaaaactat |
14337187 |
T |
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