View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5478_low_80 (Length: 240)

Name: NF5478_low_80
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5478_low_80
NF5478_low_80
[»] chr7 (3 HSPs)
chr7 (69-233)||(3191587-3191753)
chr7 (70-141)||(42012690-42012761)
chr7 (184-230)||(29152350-29152396)
[»] chr8 (3 HSPs)
chr8 (68-233)||(32166655-32166821)
chr8 (69-109)||(33897625-33897665)
chr8 (183-227)||(33897742-33897786)
[»] chr5 (4 HSPs)
chr5 (69-166)||(7113706-7113804)
chr5 (189-239)||(37077663-37077713)
chr5 (200-237)||(40483704-40483740)
chr5 (200-232)||(972851-972883)
[»] chr1 (2 HSPs)
chr1 (201-233)||(2534436-2534468)
chr1 (192-232)||(34601630-34601670)
[»] chr6 (2 HSPs)
chr6 (200-234)||(32047196-32047230)
chr6 (200-234)||(32342622-32342656)
[»] chr3 (2 HSPs)
chr3 (200-233)||(42091811-42091844)
chr3 (175-232)||(54437803-54437860)
[»] scaffold0564 (1 HSPs)
scaffold0564 (200-232)||(5456-5488)
[»] chr2 (1 HSPs)
chr2 (200-232)||(2248957-2248989)


Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 69 - 233
Target Start/End: Complemental strand, 3191753 - 3191587
Alignment:
Q  69 cttcatttaagatgtgatttacatccttttcgttccaaaattaaatcatatttgacatgaagggtaaattaccgccaatacatggaggaaaaatgtagac 168  Q
    |||||||||||||||||||||||||| |||| || ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3191753 cttcatttaagatgtgatttacatccctttcatttcaaaattgaatcgtatttgacatgaagggtaaattaccgccaatacatggaggaaaaatgtagac 3191654  T
Q  169 tcac--atgattttcttttactatcagttattcttttcatctcaaaaacatcaaacttcttcatctc 233  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3191653 tcacatatgattttcttttactatcagttattcttttcatctcaaaaacatcaaagttcttcatctc 3191587  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 42012690 - 42012761
Alignment:
Q  70 ttcatttaagatgtgatttacatccttttcgttccaaaattaaatcatatttgacatgaagggtaaattacc 141  Q
    |||||||||||||||||||||||| |||||||||||||||  |||||||| || ||||| || |||||||||    
T  42012690 ttcatttaagatgtgatttacatctttttcgttccaaaatcgaatcatatatgtcatgagggataaattacc 42012761  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 29152396 - 29152350
Alignment:
Q  184 ttactatcagttattcttttcatctcaaaaacatcaaacttcttcat 230  Q
    |||| |||||||| | |||||||||||| ||||||||||||||||||    
T  29152396 ttacaatcagttactattttcatctcaataacatcaaacttcttcat 29152350  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 233
Target Start/End: Complemental strand, 32166821 - 32166655
Alignment:
Q  68 tcttcatttaagatgtgatttacatccttttcgttccaaaattaaatcatatttgacatgaagggtaaattaccgccaatacatggaggaaaaatgtaga 167  Q
    ||||||||||| ||||||||||||||  ||||||||||||||  |||| || ||| ||| |  ||||||||||  ||||| |||  | ||||||||||      
T  32166821 tcttcatttaacatgtgatttacatctctttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattcatcaaagaaaaatgtatg 32166722  T
Q  168 ctca-catgattttcttttactatcagttattcttttcatctcaaaaacatcaaacttcttcatctc 233  Q
    |||| |   | ||| | ||||||||| ||||  |||||||||||| |||||||||||||||||||||    
T  32166721 ctcatcgatagtttttcttactatcaattatcattttcatctcaagaacatcaaacttcttcatctc 32166655  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 33897625 - 33897665
Alignment:
Q  69 cttcatttaagatgtgatttacatccttttcgttccaaaat 109  Q
    |||||||||| |||||||||||||| ||||||||| |||||    
T  33897625 cttcatttaacatgtgatttacatctttttcgttctaaaat 33897665  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 33897742 - 33897786
Alignment:
Q  183 tttactatcagttattcttttcatctcaaaaacatcaaacttctt 227  Q
    |||||||||| ||| | |||||||||||||||||||||| |||||    
T  33897742 tttactatcaattactattttcatctcaaaaacatcaaaattctt 33897786  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 7113804 - 7113706
Alignment:
Q  69 cttcatttaagatgtgatttacatccttttcgttccaaaattaaatcatatttgacatgaagggtaaattaccgc-caatacatggaggaaaaatgtag 166  Q
    |||||||||||||||||||||||||  ||| |||||| |||| |||| |||||||||| |  ||||||||||| | |||| |||  |||||||||||||    
T  7113804 cttcatttaagatgtgatttacatctcttttgttccataattgaatcgtatttgacatcagcggtaaattacccctcaattcatcaaggaaaaatgtag 7113706  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 37077663 - 37077713
Alignment:
Q  189 atcagttattcttttcatctcaaaaacatcaaacttcttcatctcactcga 239  Q
    |||||||||  |||||||||||| ||||| |||||||||||||||| ||||    
T  37077663 atcagttatcattttcatctcaagaacattaaacttcttcatctcattcga 37077713  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 40483704 - 40483740
Alignment:
Q  200 ttttcatctcaaaaacatcaaacttcttcatctcactc 237  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  40483704 ttttcatct-aaaaacatcaaacttcttcatctcactc 40483740  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 972851 - 972883
Alignment:
Q  200 ttttcatctcaaaaacatcaaacttcttcatct 232  Q
    |||||||||||| ||||||||||||||||||||    
T  972851 ttttcatctcaagaacatcaaacttcttcatct 972883  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 2534468 - 2534436
Alignment:
Q  201 tttcatctcaaaaacatcaaacttcttcatctc 233  Q
    |||||||||||||||||||||||||||||||||    
T  2534468 tttcatctcaaaaacatcaaacttcttcatctc 2534436  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 34601670 - 34601630
Alignment:
Q  192 agttattcttttcatctcaaaaacatcaaacttcttcatct 232  Q
    ||||||| ||||||||||||||||||||||| | |||||||    
T  34601670 agttattattttcatctcaaaaacatcaaacgttttcatct 34601630  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 32047196 - 32047230
Alignment:
Q  200 ttttcatctcaaaaacatcaaacttcttcatctca 234  Q
    |||||||||||| ||||||||||||||||||||||    
T  32047196 ttttcatctcaagaacatcaaacttcttcatctca 32047230  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 32342622 - 32342656
Alignment:
Q  200 ttttcatctcaaaaacatcaaacttcttcatctca 234  Q
    ||||||||||||||||||||||||| |||||||||    
T  32342622 ttttcatctcaaaaacatcaaactttttcatctca 32342656  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 42091844 - 42091811
Alignment:
Q  200 ttttcatctcaaaaacatcaaacttcttcatctc 233  Q
    ||||||||||||||||||||||||| ||||||||    
T  42091844 ttttcatctcaaaaacatcaaactttttcatctc 42091811  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 54437803 - 54437860
Alignment:
Q  175 gattttcttttactatcagttattcttttcatctcaaaaacatcaaacttcttcatct 232  Q
    |||||| | |||| ||||||||   |||| ||||||||||||||||||||||||||||    
T  54437803 gattttttcttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatct 54437860  T

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Target: scaffold0564 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 5488 - 5456
Alignment:
Q  200 ttttcatctcaaaaacatcaaacttcttcatct 232  Q
    ||||||||||||||| |||||||||||||||||    
T  5488 ttttcatctcaaaaagatcaaacttcttcatct 5456  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 2248989 - 2248957
Alignment:
Q  200 ttttcatctcaaaaacatcaaacttcttcatct 232  Q
    |||||||||||||||||| ||||||||||||||    
T  2248989 ttttcatctcaaaaacattaaacttcttcatct 2248957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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