View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5478_low_88 (Length: 235)

Name: NF5478_low_88
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5478_low_88
NF5478_low_88
[»] chr1 (1 HSPs)
chr1 (21-235)||(2785448-2785662)
[»] chr5 (8 HSPs)
chr5 (161-235)||(22524063-22524137)
chr5 (161-235)||(22534324-22534398)
chr5 (84-153)||(22523895-22523964)
chr5 (95-153)||(22530795-22530853)
chr5 (21-55)||(22521985-22522019)
chr5 (161-234)||(22530963-22531036)
chr5 (109-150)||(22534167-22534208)
chr5 (109-153)||(22537684-22537728)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 2785662 - 2785448
Alignment:
Q  21 acaaggacagccggtatttatcagcaaactcgaaggttataggagtttttctgcatccgagacacttacagcggactggcctgctggtatgcaaataggt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2785662 acaaggacagccggtatttatcagcaaactcgaaggttataggagtttttctgcatccgagacacttacagcggactggcctgctggtatgcaaataggt 2785563  T
Q  121 cggcttatatctcaggatcacatgaataacaagcagtatataggaaaggcagatttcctagtttttcgggcaatgaaccagcacggttttcttggtcagc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2785562 cggcttatatctcaggatcacatgaataacaagcagtatataggaaaggcagatttcctagtttttcgggcaatgaaccagcacggttttcttggtcagc 2785463  T
Q  221 tgaaggaaaagaagc 235  Q
    |||||||||||||||    
T  2785462 tgaaggaaaagaagc 2785448  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 22524063 - 22524137
Alignment:
Q  161 taggaaaggcagatttcctagtttttcgggcaatgaaccagcacggttttcttggtcagctgaaggaaaagaagc 235  Q
    |||||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||||||| ||||||||||||    
T  22524063 taggaaaggcagattttctagtatttcgggcaatgaacccgcatggttttcttggtcagctgcaggaaaagaagc 22524137  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 22534324 - 22534398
Alignment:
Q  161 taggaaaggcagatttcctagtttttcgggcaatgaaccagcacggttttcttggtcagctgaaggaaaagaagc 235  Q
    ||||||| |||||||||||||||||||||||||||||||  || |||||||||||||||||| | ||||| ||||    
T  22534324 taggaaacgcagatttcctagtttttcgggcaatgaacccacatggttttcttggtcagctgcaagaaaaaaagc 22534398  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 22523895 - 22523964
Alignment:
Q  84 acttacagcggactggcctgctggtatgcaaataggtcggcttatatctcaggatcacatgaataacaag 153  Q
    |||| ||||| |||||||| |||  |||||||||| ||||||||||||||||||||||||||||||||||    
T  22523895 acttgcagcgaactggcctcctgtaatgcaaatagttcggcttatatctcaggatcacatgaataacaag 22523964  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 22530795 - 22530853
Alignment:
Q  95 actggcctgctggtatgcaaataggtcggcttatatctcaggatcacatgaataacaag 153  Q
    |||||||| |||  ||||| |||| |||| |||||||||||||||||||||||||||||    
T  22530795 actggcctcctgaaatgcacatagttcggattatatctcaggatcacatgaataacaag 22530853  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 22521985 - 22522019
Alignment:
Q  21 acaaggacagccggtatttatcagcaaactcgaag 55  Q
    ||||||||||||||||||||||| |||||||||||    
T  22521985 acaaggacagccggtatttatcaccaaactcgaag 22522019  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 22530963 - 22531036
Alignment:
Q  161 taggaaaggcagatttcctagtttttcgggcaatgaaccagcacggttttcttggtcagctgaaggaaaagaag 234  Q
    ||||| ||||||||||||||||||| |||||||  |||  ||| ||||| |||||||  ||| |||||||||||    
T  22530963 taggagaggcagatttcctagttttccgggcaagaaacacgcatggtttccttggtcttctgcaggaaaagaag 22531036  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 22534167 - 22534208
Alignment:
Q  109 atgcaaataggtcggcttatatctcaggatcacatgaataac 150  Q
    |||||||||| || ||||||| ||||||||||||||||||||    
T  22534167 atgcaaatagttcagcttatacctcaggatcacatgaataac 22534208  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 22537684 - 22537728
Alignment:
Q  109 atgcaaataggtcggcttatatctcaggatcacatgaataacaag 153  Q
    |||||||||| ||| ||||||||||||||| |||| |||||||||    
T  22537684 atgcaaatagttcgacttatatctcaggattacatcaataacaag 22537728  T

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