View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5478_low_96 (Length: 218)
Name: NF5478_low_96
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_96 |
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| [»] scaffold0116 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0925 (1 HSPs) |
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Alignment Details
Target: scaffold0116 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0116
Description:
Target: scaffold0116; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 33091 - 32895
Alignment:
| Q |
19 |
aaactagtacatgttctttttattcatgagatttcaacaaagaataattcatattgcctagttaaacaacacatatacatttgt--ttttaataatttcc |
116 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| ||||||| |
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| T |
33091 |
aaactagtacatgttctttttattcatgagatttcaacaaagaataattcatgttgcctagttaaacagcacatatacatttgtttttttaagaatttcc |
32992 |
T |
|
| Q |
117 |
tacacgtacagtataactatatatactatgtcta----------tagtgatcatagtttggcattcttaagtttcttttctttacaacgtacctatg |
203 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
32991 |
tacacgtacagtataactatatatactatgtctatgtactaagttagtgatcatagtttggcattcttaagtttctttcctttacaacatacctatg |
32895 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 394180 - 394365
Alignment:
| Q |
19 |
aaactagtacatgttctttttattcatgagatttcaacaaagaataattcatattgcctagttaaacaacacatatacatttgtttttaataatttccta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||| || |
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| T |
394180 |
aaactagtacatgttctttttattcatgagatttcaacaaagaataattcatgttgcctagttaaacatcacatatacatttgtttttaagaatttcata |
394279 |
T |
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| Q |
119 |
cacgtacagtataactatatatactatgtcta----------tagtgatcatagtttggcattcttaagtttcttttctttacaac |
194 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
394280 |
cacgtacagtataactatatatactatgtctatgtactaagttagtgatcatagtttggcattcttaagtttctttcctttacaac |
394365 |
T |
|
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Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 10232985 - 10232791
Alignment:
| Q |
19 |
aaactagtacatgttctttttattcatgagatttcaacaaagaataattcatattgcctagttaaacaacacatatacatttgtttttaataatttccta |
118 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | |||||||||||||||||| || ||||||||| |
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| T |
10232985 |
aaactagtacatgttctttttattcatgagattttaacaaagaataattcatgttgcctagttaaaaagcacatatacatttgttttaaagaatttccta |
10232886 |
T |
|
| Q |
119 |
cacgtacagtataactatatatactatgtcta----------tagtgatcatagtttggcattcttaagtttcttttctttacaacgtacctatg |
203 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
10232885 |
cacgtacaatataactatatatactatgtctacgtactaagttagtgatcatagtttggcattcttaagtttctttcctttacaacatacctatg |
10232791 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 21184782 - 21184980
Alignment:
| Q |
19 |
aaactagtacatgttctttttattcatgagatttcaacaaagaataattcatattgcctagttaaacaacacatatacatttgtttttaataatttccta |
118 |
Q |
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|
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21184782 |
aaactagtacatgttctttttattcatgatatttcaacaaagaataattcaggttgcctagttaaacaacacatatacatttgtttttaagaatttccta |
21184881 |
T |
|
| Q |
119 |
cacgtaca----gtataactatatatactatgtcta----------tagtgatcatagtttggcattcttaagtttcttttctttacaacgtacctatg |
203 |
Q |
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||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
21184882 |
cacgtacgtacggtataactatatatactatgtctatgtactaagttagtgattatagtttggcattcttaagtttctttcctttacaacatacctatg |
21184980 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0925 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: scaffold0925
Description:
Target: scaffold0925; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 814 - 613
Alignment:
| Q |
19 |
aaactagtacatgttctttttattcatgagatttcaacaaagaataattcatattgcctagttaaacaacacatataca-------tttgtttttaataa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||| || |
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| T |
814 |
aaactagtacatgttctttttattcatgagatttcaacaaagaataattcatgttgcctagttaaacagcacatatacattttttttttatttttaagaa |
715 |
T |
|
| Q |
112 |
tttcctacacgtacagtataactatatatactatgtcta----------tagtgatcatagtttggcattcttaagtttcttttctttacaacgtaccta |
201 |
Q |
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|||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
714 |
tttcctacacatgcagtataactatatatactatgtctatgtactaagttagtgatcatagtttggcattcttaagtttctttcctttacaacataccta |
615 |
T |
|
| Q |
202 |
tg |
203 |
Q |
| |
|
|| |
|
|
| T |
614 |
tg |
613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 22388687 - 22388888
Alignment:
| Q |
19 |
aaactagtacatgttctttttattcatgagatttcaacaaagaataattcatattgcctagttaaacaacacatataca-------tttgtttttaataa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||| || |
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|
| T |
22388687 |
aaactagtacatgttctttttattcatgagatttcaacaaagaataattcatgttgcctagttaaacagcacatatacattttttttttatttttaagaa |
22388786 |
T |
|
| Q |
112 |
tttcctacacgtacagtataactatatatactatgtcta----------tagtgatcatagtttggcattcttaagtttcttttctttacaacgtaccta |
201 |
Q |
| |
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|||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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|
| T |
22388787 |
tttcctacacatgcagtataactatatatactatgtctatgtactaagttagtgatcatagtttggcattcttaagtttctttcctttacaacataccta |
22388886 |
T |
|
| Q |
202 |
tg |
203 |
Q |
| |
|
|| |
|
|
| T |
22388887 |
tg |
22388888 |
T |
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