View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5478_low_97 (Length: 216)
Name: NF5478_low_97
Description: NF5478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5478_low_97 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 25 - 200
Target Start/End: Original strand, 1339655 - 1339830
Alignment:
| Q |
25 |
cttattgcacacgcttaattgtcagcattatcttctataagaatgggagccaacccagggtctaaaataatttgtttaaatacttttacattatatgtgt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1339655 |
cttattgcacacgcttaattgtcagcattatcttctataagaatgggagccaactcagggtctaaaataatttgtttaaatacttttacattatatgtgt |
1339754 |
T |
|
| Q |
125 |
gtggcctacatttttggtgtcatctctggattgcaaagtttattctgacagaatagttacatacagtaagtataat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1339755 |
gtggcctacatttttggtgtcatctctggattgcaaagtttattctgacagaatagttacatacagtaagtataat |
1339830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University