View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5479_high_1 (Length: 1293)
Name: NF5479_high_1
Description: NF5479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5479_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 627; Significance: 0; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 621 - 1283
Target Start/End: Complemental strand, 40291909 - 40291248
Alignment:
| Q |
621 |
aaggatgacgggactgatcgtgtgcatgtggtgccactgattttgtattacctgctgtaggatcaaaatttgagccgtctgaaatatcgagctatctcga |
720 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40291909 |
aaggatgacgggactgatcgtgtgcatgtggtgccactgattttgtattacctgctgaaggatcaaaatttgagccgtctgaaatatcgagctatctcga |
40291810 |
T |
|
| Q |
721 |
agatgaaaaggtgagattgttaggtccaatctcttctgttccctgcaaacaacaaacaataaaagcactgatcatgcttattttgacatgaaatcatact |
820 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40291809 |
agatgaaaaggtgagattgttaggtccaatctcttctgttccctgcaaacaacaaacaataaaagcactgatcatgcttattttgacatgaaatcatact |
40291710 |
T |
|
| Q |
821 |
ttcagatccttggactcaagagaattgaacgggtacttctggttggaacttccttgaatgttgttggtgaggtaatttaataactttcaagaatatagtt |
920 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40291709 |
ttcagatccttggactcaagagaattgaacgggtacttctggttggaacttccttgaatgttgttggtgaggtaatttaattactttcaagaatatagtt |
40291610 |
T |
|
| Q |
921 |
agatttattctctacatattacataattttatgacaattggtatttggagtgttgcaaagtagattgctaatggtgcaatataacaagttacgtgttgga |
1020 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
40291609 |
agatttattctctacatattacataattttatgacaattggtatttagagtgttgcaaagtagattgctaaaggtgcaatataacaagttacgtg-tgga |
40291511 |
T |
|
| Q |
1021 |
ccaatcatttccttaaaactccccattatgagtattcaaactcggatggtaccattgctatttctaaaaactgaaatgcattagagttacaacatatgaa |
1120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40291510 |
ccaatcatttccttaaaactccccattatgagtattcaaactcggatggtaccattgctatttctaaaaactgaaatgcattagagttacaacatatgaa |
40291411 |
T |
|
| Q |
1121 |
aatgatattattattatagacgttttggttcaaaagaaagactgcattctatttacattttatcaactgtggttaataatactaatcatttgctgtttca |
1220 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40291410 |
aattatattattattatagacgttttggttcaaaagaaagactgcattctatttacattttatcaactgtggttaataatactaatcatttgctgtttca |
40291311 |
T |
|
| Q |
1221 |
aacccccttcttttacaagaataatttttaaattgtatgatcaggcctctaaagatgatgatg |
1283 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40291310 |
aacccccttcttttacaataataattttaaaattgtatgatcaggcctctaaagatgatgatg |
40291248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 18 - 564
Target Start/End: Complemental strand, 40292531 - 40291985
Alignment:
| Q |
18 |
gttgcaatttgggctgctgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggatgcagaaaaattacctatggttgtttcaatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40292531 |
gttgcaatttgggctgctgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggatgcagaaaaattacctatggttgtttcaatt |
40292432 |
T |
|
| Q |
118 |
tctggcgaagttgcttttgaaaccccaatcaagtgcaagattagcggtttaagtggtgtaatagttgacgaaagtgtatgtagacttcaatttctgacga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40292431 |
tctggcgaagttgcttttgaaaccccaatcaagtgcaagattagcggtttaagtggtgtaatagttgacgaaagtgtatgtagacttcaatttctgacga |
40292332 |
T |
|
| Q |
218 |
gcatgaataatcactttcattttagccctttgcaactaatactgcacctgttttctaattttctttttaggtagaggaacattatcttaaaaagattgag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40292331 |
gcatgaataatcactttcattttagccctttgcaactaatactgcacctgttttctaattttctttttaggtagaggaacattatcttaaaaaggttgag |
40292232 |
T |
|
| Q |
318 |
cgaaaagagaaatgcgagtgtgctattgagcacaaaaagacatgcaattatgctgatcccttttttgacaagaatgatgttttttcatggacacaacctt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
40292231 |
cgaaaagagaaatgcgagtgtgctattgagcacaaaaagacatgcagttatgctgattccttttttgacaagaatgatgttttttcatggacacagcatt |
40292132 |
T |
|
| Q |
418 |
ctaggctcatatcatcaattccaaaagaggttccatggtacctggtgtgtagtttgtttctgtttctctaatgcaatttttgttgttactttcttaaatt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40292131 |
ctaggctcatatcatcaattccaaaagaggttccatggtacctggtgtgtagtttgtttctgtttctctaatgcaatttttgttgttattttcttaaatt |
40292032 |
T |
|
| Q |
518 |
caatttctgtccctccttgagccaaaaataggaaatgatagtaaatt |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40292031 |
caatttctgtccctccttgagccaaaaataggaaatgatagtaaatt |
40291985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 5e-47
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 40285255 - 40285051
Alignment:
| Q |
21 |
gcaatttgggctgctgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggatgcagaaaaattacctatggttgtttcaatttct |
120 |
Q |
| |
|
|||||||| |||||||||||||||||||| | ||||||||||||||||||||| |||||| |||||| |||| ||||| || ||||| |||||||| |
|
|
| T |
40285255 |
gcaatttgtgctgctgtggtttctgatcatggttgggattcttcacttttcagaacaactactggatgttgaaaggttaccattgcttgttgcaatttct |
40285156 |
T |
|
| Q |
121 |
ggcgaagttgcttttgaaaccccaatcaagtgcaagattagcggtttaagtggtgtaatagttgacgaaagtgtatgtagacttcaatttctgacgagca |
220 |
Q |
| |
|
||| | |||| || |||||||||||| |||||| |||| | |||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
40285155 |
ggcaacgttgtttctgaaaccccaattaagtgcgagataactggtttaagaggtgtaatagttgaagaaagagtatgtagacttcaatttctgactagca |
40285056 |
T |
|
| Q |
221 |
tgaat |
225 |
Q |
| |
|
||||| |
|
|
| T |
40285055 |
tgaat |
40285051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 807 - 999
Target Start/End: Complemental strand, 40271920 - 40271730
Alignment:
| Q |
807 |
catgaaatcatactttcagatccttggactcaagagaattgaacgggtacttctggttggaacttccttgaatgttgttggtgaggtaatttaataactt |
906 |
Q |
| |
|
||||||| ||| |||||||| ||||| ||||||| |||||||||||||||| ||||||||||||||| | |||||||||| ||||||| |||| | || |
|
|
| T |
40271920 |
catgaaacaatattttcagattcttggcttcaagaggattgaacgggtacttccggttggaacttccttaactgttgttggtcaggtaatctaattagtt |
40271821 |
T |
|
| Q |
907 |
tcaagaatatagttagatttattctctacatattacataattttatgacaattggtatttggagtgttgcaaagtagattgctaatggtgcaa |
999 |
Q |
| |
|
| ||| | |||||| ||||| ||| ||| |||||||||| || | |||||| ||||| |||||||||||||||||| || ||||||||| |
|
|
| T |
40271820 |
tgaagcactgagttagttttat--actatatagtacataatttcattataattggcatttgaagtgttgcaaagtagattccttatggtgcaa |
40271730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 35 - 229
Target Start/End: Complemental strand, 40258063 - 40257870
Alignment:
| Q |
35 |
tgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggatgcagaaaaattacctatggttgtttcaatttctggcgaagttgcttt |
134 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| ||| || |||||||| |||||||||| ||| | || |
|
|
| T |
40258063 |
tgtggtttctgatcatccttgggattcttgttttttcagcacaactgttggatgaagaaatatttcccttggttgttgcaatttctggaagagtgggttc |
40257964 |
T |
|
| Q |
135 |
tgaaaccccaatcaagtgcaagattagcggtttaagtggtgtaatagttgacgaaagtgtatgtagacttcaatttctgacgagcatgaataatc |
229 |
Q |
| |
|
|||||| ||||| | ||| || | || |||||||| ||||| ||| |||| |||| ||||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
40257963 |
tgaaactccaattagctgcgagttcagtggtttaagaggtgttataattgaagaaacagtatgtatacttc-atttctgaaaagcatgaataatc |
40257870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 820 - 901
Target Start/End: Complemental strand, 40257072 - 40256991
Alignment:
| Q |
820 |
tttcagatccttggactcaagagaattgaacgggtacttctggttggaacttccttgaatgttgttggtgaggtaatttaat |
901 |
Q |
| |
|
|||||||| |||||| | || ||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
40257072 |
tttcagatgcttggagttaaaagaattgaacgggtacttccagttggaacttccttgactgttgttggtgaggtaatctaat |
40256991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 832 - 992
Target Start/End: Complemental strand, 40265787 - 40265630
Alignment:
| Q |
832 |
ggactcaagagaattgaacgggtacttctggttggaacttccttgaatgttgttggtgaggtaatttaataactttcaagaatatagttagatttattct |
931 |
Q |
| |
|
||||| |||||||||||| ||| ||||| | ||||||||||||||| |||||||||||||||||| |||| | |||||||||| |||||| || | |
|
|
| T |
40265787 |
ggacttaagagaattgaatgggcacttccgtttggaacttccttgactgttgttggtgaggtaatctaatcagtttcaagaatgcagttag-----tttt |
40265693 |
T |
|
| Q |
932 |
ctacatattacataattttatgacaattggta--tttggagtgttgcaaagtagattgctaat |
992 |
Q |
| |
|
||| |||||||||||||| | | ||| ||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
40265692 |
ctatatattacataatttcagtatgattagtattttttgagtgttgcaaagtagatttctaat |
40265630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 40266524 - 40266330
Alignment:
| Q |
20 |
tgcaatttgggctgctgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggatgcagaaaaattacctatggttgtttcaatttc |
119 |
Q |
| |
|
||||||||| |||||| ||||||| |||| |||| |||||| ||| |||||| |||| || |||||| ||||| || || |||||||| ||||||| |
|
|
| T |
40266524 |
tgcaatttgtgctgctacggtttctaatcatacttgagattct-cacgtttcagaacaattgctggatggagaaagatcacacttggttgttgcaatttc |
40266426 |
T |
|
| Q |
120 |
tggcgaagttgcttttgaaaccccaatcaagtgcaagattagcggtttaagtggtgtaatagttgacgaaagtgtatgtagacttcaatttctgac |
215 |
Q |
| |
|
||| |||| || |||||||||||| |||||| || | | |||||||| ||||| ||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
40266425 |
tgggtgtgttgtttctgaaaccccaattaagtgcgagttgactggtttaagaggtgttgtagttgaagaaacagtatgtagacttcaatttctgac |
40266330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1231 - 1281
Target Start/End: Complemental strand, 40283832 - 40283782
Alignment:
| Q |
1231 |
ttttacaagaataatttttaaattgtatgatcaggcctctaaagatgatga |
1281 |
Q |
| |
|
|||||||||||| |||||| || |||||||||||||||||||||||||||| |
|
|
| T |
40283832 |
ttttacaagaattattttttaactgtatgatcaggcctctaaagatgatga |
40283782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 798 - 896
Target Start/End: Complemental strand, 40284480 - 40284382
Alignment:
| Q |
798 |
ttattttgacatgaaatcatactttcagatccttggactcaagagaattgaacgggtacttctggttggaacttccttgaatgttgttggtgaggtaat |
896 |
Q |
| |
|
|||||||| ||||||||||||||||||| || ||| | ||||| |||||||| ||||||| |||||||||| | || | |||||||||| ||||||| |
|
|
| T |
40284480 |
ttattttgtcatgaaatcatactttcaggtcaagggattgaagaggattgaacgagtacttccggttggaactgctttaactgttgttggtcaggtaat |
40284382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 57 - 210
Target Start/End: Complemental strand, 40272740 - 40272587
Alignment:
| Q |
57 |
gattcttcacttttcagcacaactgttggatgcagaaaaattacctatggttgtttcaatttctggcgaagttgcttttgaaaccccaatcaagtgcaag |
156 |
Q |
| |
|
|||||||||||||||||| || ||| |||||||| | | |||||| | ||||||| ||||||||||| ||||| || |||| ||||||| | | || || |
|
|
| T |
40272740 |
gattcttcacttttcagctcatctgatggatgcaaatatattacccagggttgttacaatttctggcagagttgtttgtgaagccccaattacgggcgag |
40272641 |
T |
|
| Q |
157 |
attagcggtttaagtggtgtaatagttgacgaaagtgtatgtagacttcaattt |
210 |
Q |
| |
|
| || |||||| | |||| |||||| || ||| | ||||||| |||||||||| |
|
|
| T |
40272640 |
ttgagtggtttaggaggtgcaatagtcgaagaacgagtatgtaaacttcaattt |
40272587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 300
Target Start/End: Complemental strand, 40257841 - 40257775
Alignment:
| Q |
234 |
tcattttagccctttgcaactaatactgcacctgttttctaattttctttttaggtagaggaacatt |
300 |
Q |
| |
|
||||||| ||||||| ||||||| |||| ||||||||| ||||||||||||||| |||| |||||| |
|
|
| T |
40257841 |
tcattttggccctttacaactaacactgaacctgttttacaattttctttttaggcagagcaacatt |
40257775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 40272545 - 40272472
Alignment:
| Q |
234 |
tcattttagccctttgcaactaatactgcacctgttttctaattttctttttaggtagaggaacattatcttaaa |
308 |
Q |
| |
|
||||||||| |||||||||||| || | ||||||||| |||||| || |||||||||||||||| |||||||| |
|
|
| T |
40272545 |
tcattttagtcctttgcaacta-tattatacctgttttgcaatttttttattaggtagaggaacatcatcttaaa |
40272472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 6e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 6e-62
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 43461325 - 43461498
Alignment:
| Q |
18 |
gttgcaatttgggctgctgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggatgcagaaaaattacctatggttgtttcaatt |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
43461325 |
gttgcaatttgggatgctgtggtttctgacgacgcttgggatttttcactttttagcacaactgttggatgcggaaaaattacccttggttgtttcaatt |
43461424 |
T |
|
| Q |
118 |
tctggcgaagttgcttttgaaaccccaatcaagtgcaagattagcggtttaagtggtgtaatagttgacgaaag |
191 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43461425 |
tctgacgaagttgcttctgaaaccccaatcaagtgcgagattagtagtttaagtggtgtaatagttgacgaaag |
43461498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 7076450 - 7076519
Alignment:
| Q |
18 |
gttgcaatttgggctgctgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggat |
87 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||| ||||| ||||||||| ||||||| |||||||| |
|
|
| T |
7076450 |
gttgcaatttgggccgccgtggtttctgacgacgctttggatttttcactttttagcacaattgttggat |
7076519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University