View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5479_high_10 (Length: 248)
Name: NF5479_high_10
Description: NF5479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5479_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 33726539 - 33726754
Alignment:
| Q |
19 |
ggtggatcaacagctgtaactgcgatattgatcgatggaagaagactatggatagctaatgttggagactcacgagctgttctttcaagaaaagggcaag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33726539 |
ggtggatcaacagctgtaactgcgatattaatcgatggaagaagactatggatagctaatgttggagactcacgagctgttctttcaagaaaagggcaag |
33726638 |
T |
|
| Q |
119 |
cagtacaaatgactatcgatcacgaacctaacacagaacgaggcagcattgagactagaggtggttttgtctccaacttgccaggtactttaaaccatta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33726639 |
cagtacaaatgactatcgatcacgaacctaacacagaacgaggcagcattgagactagaggtggttttgtctccaacttgccaggtactttaaaccatta |
33726738 |
T |
|
| Q |
219 |
attaaaccagaattat |
234 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33726739 |
attaaaccagaattat |
33726754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 26531743 - 26531932
Alignment:
| Q |
19 |
ggtggatcaacagctgtaactgcgatattgatcgatggaagaagactatggatagctaatgttggagactcacgagctgttctttcaagaaaagggcaag |
118 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||| |||| || |||||| ||||||||| ||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
26531743 |
ggtggatcaacagctgttactgcaatattaatcaatggtcaaatgttatggacagctaatgtaggagattcacgagcggttctttcaagaaaaggtcaag |
26531842 |
T |
|
| Q |
119 |
cagtacaaatgactatcgatcacgaacctaacacagaacgaggcagcattgagactagaggtggttttgtctccaacttgccaggtactt |
208 |
Q |
| |
|
|||| ||| |||||| ||||| || ||||||||||||||||||| |||||||| || ||||||||||||||||||| | |||||||||| |
|
|
| T |
26531843 |
cagtgcaattgactactgatcatgagcctaacacagaacgaggcatcattgagaataaaggtggttttgtctccaacattccaggtactt |
26531932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 204
Target Start/End: Complemental strand, 37427345 - 37427204
Alignment:
| Q |
63 |
actatggatagctaatgttggagactcacgagctgttctttcaagaaaagggcaagcagtacaaatgactatcgatcacgaacctaacacagaacgaggc |
162 |
Q |
| |
|
||||||| | || ||||||||||| || ||||| ||||| ||||| |||| ||| ||||||||| ||| |||||| |||||||| || ||||| ||| |
|
|
| T |
37427345 |
actatgggtcgccaatgttggagattcccgagcagttctatcaaggggaggggtagcggtacaaatgtctaccgatcatgaacctaatacggaacgtggc |
37427246 |
T |
|
| Q |
163 |
agcattgagactagaggtggttttgtctccaacttgccaggt |
204 |
Q |
| |
|
|||||||||| ||||| || |||||||| ||| |||||||| |
|
|
| T |
37427245 |
agcattgagaacagaggcggctttgtctcaaacatgccaggt |
37427204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University