View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5479_high_5 (Length: 276)
Name: NF5479_high_5
Description: NF5479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5479_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 7221920 - 7222147
Alignment:
| Q |
7 |
attatagcctgaataggagcagtagaagggacattctccatcataggttcctttatgagattttgccaattcgaaaagctgccaggaaattgtgagaaat |
106 |
Q |
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| T |
7221920 |
attatagcctgaataggagcagtagaagggacattctccatcataggttcctttatgagatcttgccaattcgaaaagctgccaggaaattgtgagaaat |
7222019 |
T |
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| Q |
107 |
aaattaagctttcatattcccaaccaatactattggttacttcaatnnnnnnnnnnnnnnnnnnnnctacaagctacaaatgtgcatttttctatacatg |
206 |
Q |
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| T |
7222020 |
aaattaagctttcatattcccaaccaatactattggttacttcaat----aaaaaaaaaatatatactacaagctacaaatgtgcatttttctatacatg |
7222115 |
T |
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| Q |
207 |
taattggtatattgtctagatttaaatataag |
238 |
Q |
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| T |
7222116 |
taattggtatattgtctaggtttaaatataag |
7222147 |
T |
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Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 48526565 - 48526655
Alignment:
| Q |
8 |
ttatagcctgaataggagcagtagaagggacattctccatcataggttcctttatgagattttgccaattcgaaaagctgccaggaaattg |
98 |
Q |
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| T |
48526565 |
ttatagcctgaataggagcagtagaaagggcattctccatcatatgttcctttatgtgattttgccaaatcgaaaagctgccaggaaattg |
48526655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 50305771 - 50305677
Alignment:
| Q |
30 |
agaagggacattctccatcataggttcctttatgagattttgccaattcgaaaagctgccaggaaattgtgagaaataaattaagctttcatatt |
124 |
Q |
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| T |
50305771 |
agaaaggacattctccatcataggttcctttatgaaatcttgccaattcaaaaagttgtcagaaaattggaagaaataaattaagctatcatatt |
50305677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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