View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5479_low_2 (Length: 539)
Name: NF5479_low_2
Description: NF5479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5479_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 26 - 415
Target Start/End: Original strand, 31759077 - 31759466
Alignment:
| Q |
26 |
cacgtgctgcctgactttttgggaaattgagcagcaagggacatgaaagctgagctagaaagatggtccgagacattttgagtgagaaaacccctaccgc |
125 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||||||| || |||| |||||||||| ||||||||||||||||||||||||||||| | |
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| T |
31759077 |
cacgtgctgcctgactttttgggatattgagcagcaaggaacatgaaagttgtgctacaaagatggtctgagacattttgagtgagaaaacccctaccac |
31759176 |
T |
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| Q |
126 |
taaatccacaactgatcctttccatctagaaaattgtatgtatccttgtatgggatgcattcgtgcaataaatgattttgctcgtccacgcaacaactta |
225 |
Q |
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| T |
31759177 |
tgaatccacaacagatcctttccatatagaaaattgtatgtatccttgtatgggatgcattcttgcaataaatgattctgatcgtccacgaaacaactta |
31759276 |
T |
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| Q |
226 |
cgttcttcttaccaccatttggcgttgtcttcatttgttccatcaatcccatcagggtttaaatctgaaagtaaaagcttccatactttattagtctcct |
325 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| |||| |
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| T |
31759277 |
cgttcttcttcccaccatttggccttgtcttcatttgttccatcaaccccatcagggtttaaatatgaaagtaaaagcttccgtactttattagtttcct |
31759376 |
T |
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| Q |
326 |
catcaaggtcaacattagcatgctgnnnnnnnacgggatcatatgagccttgaaacagaacaagtgcattttgctcatatacaacaatgt |
415 |
Q |
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| T |
31759377 |
catcaaggtcaacattagcatgttgttttttgacgggatcagatgagccttgaaacagaacaagtgcattttgctcatatacaacaatgt |
31759466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 31754186 - 31754399
Alignment:
| Q |
21 |
ctttgcacgtgctgcctgactttttgggaaattgagcagcaagggacatgaaagctgagctagaaagatggtccgagacattttgagtgagaaaa-cccc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| |
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| T |
31754186 |
ctttgcacgtgctgcctgactttttgggaaattgagcagcaagggacatgaaagctgagcaagaaagatggtccgagacatgttgagtgagaaaaacccc |
31754285 |
T |
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| Q |
120 |
taccgctaaatccacaactgatcctttccatctagaaaattgtatgtatccttgtatgggatgcattcgtgcaataaatgattttgctcgtccacgcaac |
219 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31754286 |
taccactaaatccacaattgatcctttccatctagaaaattgtatgtatccttgtatgggatgcattcgtgcaataaatgattctgctcgtccacgcaac |
31754385 |
T |
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| Q |
220 |
aacttacgttcttc |
233 |
Q |
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||||||| |||||| |
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| T |
31754386 |
aacttacattcttc |
31754399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 489 - 530
Target Start/End: Original strand, 31759491 - 31759532
Alignment:
| Q |
489 |
tccgtatttttccacgtattgtatctaacttttggtgatgat |
530 |
Q |
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| T |
31759491 |
tccgtatttttccacgtattgtatctaacttttggtgatgat |
31759532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 134
Target Start/End: Complemental strand, 42830637 - 42830542
Alignment:
| Q |
37 |
tgactttttgggaaattgagcagcaagggacatgaaagctgagctagaaagatggtccgagacattttgagtgagaaaacccctaccgctaaatccac |
134 |
Q |
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||||||| ||||||| ||||| ||||||||||||| || || || ||||||||||| |||||| ||||||||||||| | ||||| || ||||||| |
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| T |
42830637 |
tgactttaggggaaatcgagcaacaagggacatgaatgcagaactggaaagatggtctgagaca--ttgagtgagaaaaactctaccactgaatccac |
42830542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 277
Target Start/End: Complemental strand, 42830441 - 42830401
Alignment:
| Q |
237 |
ccaccatttggcgttgtcttcatttgttccatcaatcccat |
277 |
Q |
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| T |
42830441 |
ccaccatttggccttgtcttcatctgttccatcaaccccat |
42830401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 179 - 338
Target Start/End: Original strand, 26749650 - 26749809
Alignment:
| Q |
179 |
gatgcattcgtgcaataaatgattttgctcgtccacgcaacaacttacgttcttcttaccaccatttggcgttgtcttcatttgttccatcaatcccatc |
278 |
Q |
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|||||||||||||||||||||| | |||||| ||||| |||| ||||||||||||| |||||||||||| || ||||||| ||||||||||| |||||| |
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| T |
26749650 |
gatgcattcgtgcaataaatgagtctgctcgcccacggaacactttacgttcttcttcccaccatttggccttttcttcatctgttccatcaaccccatc |
26749749 |
T |
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| Q |
279 |
agggtttaaatctgaaagtaaaagcttccatactttattagtctcctcatcaaggtcaac |
338 |
Q |
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| T |
26749750 |
atgatttatatctaacagcaaaagcttccacactctatcagtctcctcatctaggtcaac |
26749809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 26749460 - 26749537
Alignment:
| Q |
83 |
gaaagatggtccgagacattttgagtgag-aaaacccctaccgctaaatccacaactgatcctttccatctagaaaat |
159 |
Q |
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| T |
26749460 |
gaaagatggtccgtgacattttgagtgaggaaaactcctacaactgaatccacaactgatcctttccatcgagaaaat |
26749537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 26749313 - 26749365
Alignment:
| Q |
29 |
gtgctgcctgactttttgggaaattgagcagcaagggacatgaaagctgagct |
81 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| || ||||| |
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| T |
26749313 |
gtgctgcctgactttttgggaaaccgagcagcaagggacatgaacgcagagct |
26749365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 343
Target Start/End: Complemental strand, 41978271 - 41978107
Alignment:
| Q |
179 |
gatgcattcgtgcaataaatgattttgctcgtccacgcaacaacttacgttcttcttaccaccatttggcgttgtcttcatttgttccatcaatcccatc |
278 |
Q |
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||||||| |||||||||||||| | ||||| ||| || || | || ||||| | || |||||||||||| |||||||||| ||||||||||| ||||| |
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| T |
41978271 |
gatgcatccgtgcaataaatgactctgctcttcctcggaaaacatttcgttcattttcccaccatttggccttgtcttcatctgttccatcaaccccatg |
41978172 |
T |
|
| Q |
279 |
agggtttaaatctgaaagtaaaagcttccatactttattagtctcctcatcaaggtcaacattag |
343 |
Q |
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| T |
41978171 |
actatttatatccaacatcagaagcttccacactttattggtttcctcatcaagatcaactttag |
41978107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 41978652 - 41978573
Alignment:
| Q |
80 |
ctagaaagatggtccgagacattttgagtgag-aaaacccctaccgctaaatccacaactgatcctttccatctagaaaa |
158 |
Q |
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||||| |||||||| ||||||||||||||||| ||||| || ||| | ||||||| |||||||||||||||| |||||| |
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| T |
41978652 |
ctagatagatggtctgagacattttgagtgagaaaaactccaaccaccgaatccaccactgatcctttccatcgagaaaa |
41978573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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