View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5479_low_3 (Length: 413)
Name: NF5479_low_3
Description: NF5479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5479_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 31 - 350
Target Start/End: Complemental strand, 20684346 - 20684026
Alignment:
| Q |
31 |
agatctagaattatatactcataaataatgaaattttatttttaagtctagatttcaataacttcttattgatgaaaagtcgcagccatgcataatctca |
130 |
Q |
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| T |
20684346 |
agatctagaattatatactcataaataatgaaattttatttttgagtctagatttcaataacttcttattgatgaaaagtcgcagccatgcataatctca |
20684247 |
T |
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| Q |
131 |
aaatatattggtatatgtggttaaaacaagggacaacaaacaacgattgtt-gaaatagtagtatggttttaaattgtggtctgcaacataaagaattta |
229 |
Q |
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| T |
20684246 |
aaatatattggtatatgtggttaaaacaagggacaacaaacaacgattgttagaaataggagtatggttttaaattgtggtccgcaacataaagaattta |
20684147 |
T |
|
| Q |
230 |
gaagtatagacaacaacacaccgacatccaactgcagtttcaactgtaatttggcacaatatgtgggtttgaagtgtaatcacatttgtaattaccattt |
329 |
Q |
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| T |
20684146 |
gaagtaccgacaacaactcaccgacatccaactgcagtttcaactgtaatttggcacaatatgtgggtttgaagtgtaatcacatttgtaattaccattt |
20684047 |
T |
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| Q |
330 |
aatatcattcatattaaaact |
350 |
Q |
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| T |
20684046 |
aatatcattcatattaaaact |
20684026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 392
Target Start/End: Complemental strand, 20684012 - 20683980
Alignment:
| Q |
360 |
gactggttatgagtaaaataattgactaatttc |
392 |
Q |
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| T |
20684012 |
gactggttatgagtaaaatatttgactaatttc |
20683980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 188 - 350
Target Start/End: Original strand, 19098052 - 19098207
Alignment:
| Q |
188 |
gtagtatggttttaaattgtggtctgcaacataaagaatttagaagtatagacaacaacacaccgacatccaactgcagtttcaactgtaatttggcaca |
287 |
Q |
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| T |
19098052 |
gtagcatggttttaaattgtgatctgcaatataaagaattttgaagtatcgacaacaaca--------tccaaccgcaatttcaactgtaatttggcaca |
19098143 |
T |
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| Q |
288 |
atatgtgggtttgaagtgtaatcacatttgtaattaccatttaatatcatt-catattaaaact |
350 |
Q |
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| T |
19098144 |
atatatgggttcatagtgtaaccgcaatggtaattatcatttaatatcgttccatattaaaact |
19098207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 19096556 - 19096630
Alignment:
| Q |
31 |
agatctagaattatatactcataaataatgaaattttatttttaagtctagatttcaataacttcttattgatga |
105 |
Q |
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| T |
19096556 |
agatctagaattatctactcataaataatgaaatttcattatttattttagtgtccaataacttattattgatga |
19096630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 5300252 - 5300308
Alignment:
| Q |
118 |
atgcataatctcaaaatatattggtatatgtggttaaaacaagggacaacaaacaac |
174 |
Q |
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| T |
5300252 |
atgcataatctcaaaatatattggtgtctgtagagaaaacaagggacaacgaacaac |
5300308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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