View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5479_low_8 (Length: 263)
Name: NF5479_low_8
Description: NF5479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5479_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 39785542 - 39785782
Alignment:
| Q |
19 |
tagctccgggttatgagtggagcttgtagatcatcacattgagttaagaacaaccacacaaaaagaatttgacactatatttttatctaaaactttaatt |
118 |
Q |
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| T |
39785542 |
tagctcccggttatgagtggagctcgtagattatcacattgagttaagaacaactacacaaaaagaatttgacactatatttttatctaaaactttaatt |
39785641 |
T |
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| Q |
119 |
aagtatgtgaactctctcacttatatgttgtgcaacattcattttttcattcaaggtgacacccttgcgtacatttaaaataacatttaaaataccaata |
218 |
Q |
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| T |
39785642 |
aagtatatgaactctctcacttatatgttgtgcaacattcattttttcattcaaggtgacacccttgcgtacatttaaaataacatttaaaataccaata |
39785741 |
T |
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| Q |
219 |
atatactcatatagtgtgagttcatccattcttagagtgga |
259 |
Q |
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| T |
39785742 |
atatactcatatagtgtgagttcatccattctcagagtgga |
39785782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 27668283 - 27668327
Alignment:
| Q |
133 |
tctcacttatatgttgtgcaacattcattttttcattcaaggtga |
177 |
Q |
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||||||||||||| |||||||||||||| ||||||||||| |||| |
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| T |
27668283 |
tctcacttatatgatgtgcaacattcatattttcattcaatgtga |
27668327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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