View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5479_low_9 (Length: 255)
Name: NF5479_low_9
Description: NF5479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5479_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 7221942 - 7221692
Alignment:
| Q |
1 |
actgctcctattcaggctataatgtatgtaatcactcttataattaacctttcctaattcactaagagtgaattaattaaattaatgtgatgcttatata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7221942 |
actgctcctattcaggctataatgtatgtaatcactcttataattaacctttcttaattcactaagagtgaattaattaaattaatgtgatgcttatata |
7221843 |
T |
|
| Q |
101 |
taggatgagctaatgtgggctgcaacatggctatacatggcaacaaggaaatcaatgtacatgaagtacatacaagaagaagcaattagtgctagtgtag |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7221842 |
taggatgagttaatgtgggctgcaacatggctatacatggcaacaaggaaatcaatgtacatgaagtacatacaagaagaagcaattagtgctagtgtag |
7221743 |
T |
|
| Q |
201 |
cagaattcagttgggaccttaaatatgctggagttcaagttcttctcactc |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7221742 |
cagaattcagttgggaccttaaatatgctggagttcaagttcttctcactc |
7221692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 114 - 251
Target Start/End: Complemental strand, 48526427 - 48526290
Alignment:
| Q |
114 |
tgtgggctgcaacatggctatacatggcaacaaggaaatcaatgtacatgaagtacatacaagaagaagcaattagtgctagtgtagcagaattcagttg |
213 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| |||||| |||||||||| || |||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
48526427 |
tgtgggcagcaacttggctatacatggcaacaaagaaatcgttgtacatgaaatatatacaagaagaatcaattagtgctaatgtagcagaattcagttg |
48526328 |
T |
|
| Q |
214 |
ggaccttaaatatgctggagttcaagttcttctcactc |
251 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
48526327 |
ggatcttaaatacgctggagttcaagttcttctcactc |
48526290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 48526586 - 48526544
Alignment:
| Q |
1 |
actgctcctattcaggctataatgtatgtaatcactcttataa |
43 |
Q |
| |
|
|||||||||||||||||||||| |||||| || |||||||||| |
|
|
| T |
48526586 |
actgctcctattcaggctataacgtatgttattactcttataa |
48526544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 95 - 252
Target Start/End: Original strand, 50306490 - 50306651
Alignment:
| Q |
95 |
tatatataggatgagctaatgtgggctgcaacatggctatac----atggcaacaaggaaatcaatgtacatgaagtacatacaagaagaagcaattagt |
190 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||||||| | ||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50306490 |
tatatataggatgagctaatgtgggcagcaacatggctatacatacatggcaacaggaaaatctatgtacatgaagtatatacaagaagaagcaattagt |
50306589 |
T |
|
| Q |
191 |
gctagtgtagcagaattcagttgggaccttaaatatgctggagttcaagttcttctcactcg |
252 |
Q |
| |
|
||||||||| | | ||| || |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50306590 |
gctagtgtaacggtatttagctgggaccttaaatatgtcggagttcaagttcttctcactcg |
50306651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 50306382 - 50306448
Alignment:
| Q |
11 |
ttcaggctataatgtatgtaatcactcttataattaacctttcctaattcactaagagtgaattaat |
77 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||| ||| |||||||||| ||||||| |||| |
|
|
| T |
50306382 |
ttcaggctataatgtatgtaatcacttttataatcaaccgttcttaattcactacgagtgaaataat |
50306448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University