View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5480_high_1 (Length: 769)
Name: NF5480_high_1
Description: NF5480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5480_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 554; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 18 - 613
Target Start/End: Complemental strand, 31457480 - 31456881
Alignment:
| Q |
18 |
agttgggcacttgtgactttaacatagaccagaattatgaaattgcaagtgttaaaacgaattaaggaagtaggcttctaatgtacatgtaacataagtg |
117 |
Q |
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| T |
31457480 |
agttgggcacttgtgactttaacatagaccagaattatgaaattgcaagtgttaaaaggaattaaggaagtaggctcctaatgtacatgtaacataagtg |
31457381 |
T |
|
| Q |
118 |
taattttgttttaatcaattcatctacttcattcatggtttgtgcccctatgtgcaggaaataggctccaatgctgaataggctattaactaattaaatc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
31457380 |
taattttgttttaatcaattcatctacttcattcatggtttgtgcccctatgtgcaggaaataggctccaatgctgaataggctattaattaattgaatc |
31457281 |
T |
|
| Q |
218 |
ttgaaatgggtggctgcatcaatgcatgaagaggttacacattcatttgttgcttgaattgtcatggctgaataattactacctgttacacttcaataat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31457280 |
ttgaaatgggtggctgcatcaatgcatgaagaggtttcacattcatttgttgcttgaattgtcatggctgaataattactacctgttacacttcaataat |
31457181 |
T |
|
| Q |
318 |
gcaacgacctcttccacctctttatgctcttgtatttgtcatcttgtcttgattgttctgcacgtccttttcttcaactctttatttccatgatgaaaga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31457180 |
gcaacgacctcttccacctctttatgctcttgtatttgtcatcttgtcttgattgttctgcacgtccttttcttcaactctttatttccatgatgaaaga |
31457081 |
T |
|
| Q |
418 |
aacagaccacacatctgtgttaaagcttcctaagcttttaaatggctaaaactaaagaataaattgttctaagtatttct-ggcctaattaatcaaattg |
516 |
Q |
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| T |
31457080 |
aacagaccacacatctgtgttaaagcttcctaagcttttaaatggctaaaactaaagaataaattgttctaagtatttctgggcctaattaatcaaattg |
31456981 |
T |
|
| Q |
517 |
gtcccacacacaaaattaaagaacaccacaaaattaggacttcatgcccgct---cacgccaccttcacattaaatgatcacattcacaagctttggctc |
613 |
Q |
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| T |
31456980 |
atcccacacacaaaattaaagaacaccacaaaattaggacttcatgcccgctccccacgccaccttcacattaaatgatcacattcacaagctttggctc |
31456881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 623 - 755
Target Start/End: Complemental strand, 31456678 - 31456546
Alignment:
| Q |
623 |
ctttcaaattgatcctttgctcccatcacgtaggttaattaggcctatgtacgaagttgacagagtggtggtatgaagaaatcatcaacttttcacttta |
722 |
Q |
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| T |
31456678 |
ctttcaaattgatcctttgctcccatcacgttggttaattaggcctatgtacgaagttgacagagtggtggtatgaagagatcatcaacttttcacttta |
31456579 |
T |
|
| Q |
723 |
ccattggtaaattgtcatgacattggatgatgt |
755 |
Q |
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| T |
31456578 |
ccattggtaaattgtcatgacattggatgatgt |
31456546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 16956807 - 16956706
Alignment:
| Q |
24 |
gcacttgtgactttaacatagaccagaattatgaaattgcaagtgttaaaacgaattaaggaagtaggcttctaatgtaca--tgtaacataagtgtaat |
121 |
Q |
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| T |
16956807 |
gcacttgtgactttaacatagaccagaattatgaaattgcaagtgttaaaaccaattaaggaagtaagctcctaatgtacaattgt-acataagtgtaat |
16956709 |
T |
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| Q |
122 |
ttt |
124 |
Q |
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||| |
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| T |
16956708 |
ttt |
16956706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 16957292 - 16957378
Alignment:
| Q |
18 |
agttgggcacttgtgactttaacatagaccagaattatgaaattgcaagtgttaaaacgaattaaggaagtaggcttctaatgtaca |
104 |
Q |
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| T |
16957292 |
agttgggcacttgtggctttaccatagaccagaattatgaaattgcaagtgttaaaacaaatgaaggaagtaagctcctaatgtaca |
16957378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 229 - 291
Target Start/End: Original strand, 19460670 - 19460732
Alignment:
| Q |
229 |
ggctgcatcaatgcatgaagaggttacacattcatttgttgcttgaattgtcatggctgaata |
291 |
Q |
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| T |
19460670 |
ggcttcatcaatgcatgaagaggttacacattcatttgcttctttaattatcatggctgaata |
19460732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 19456289 - 19456222
Alignment:
| Q |
224 |
tgggtggctgcatcaatgcatgaagaggttacacattcatttgttgcttgaattgtcatggctgaata |
291 |
Q |
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| T |
19456289 |
tgggtggcttcatcaatgcatggagaggttacacattcatttgctcctttaataatcatggctgaata |
19456222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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