View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5480_low_2 (Length: 336)
Name: NF5480_low_2
Description: NF5480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5480_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 19240322 - 19240627
Alignment:
| Q |
19 |
tctatatttgtgagcattctttctgcttgtgctcatctaggtgctttggatattggtgtttggattcatcgatatttgaatcgatcgaagctagtaccat |
118 |
Q |
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| T |
19240322 |
tctatatttgtgagtattctctctgcttgtgctcatctaggtgctttggaaattggtgtttggattcatcaacatttgaatcaattaaagctagtaccat |
19240421 |
T |
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| Q |
119 |
tgagtgttcgtttgaatactagtttattagatatgtatgcaaaatgtgggaatttggaattggcgaaaagattatttgattcaatgaaagtgagagacgt |
218 |
Q |
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| T |
19240422 |
tgagtgttcgtttgagtactagtttattagatatgtacgctaaatgtgggaatttggaattggcgaaaagattattcgattcaatgaacatgagagacgt |
19240521 |
T |
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| Q |
219 |
tgtatgttggaatgctatgatttctggtatggcaatgcatggagatgggaaaggtgcactcatgctgttttacgatatggaaaatgccggggtaaaacct |
318 |
Q |
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| T |
19240522 |
tgtatgttggaatgctatgatttctggtatggcaatgcatggagatgggaaaggtgccctcaagctgttttacgatatggaaaaggttggggtgaaacct |
19240621 |
T |
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| Q |
319 |
gatgat |
324 |
Q |
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|||||| |
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| T |
19240622 |
gatgat |
19240627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 19243370 - 19243405
Alignment:
| Q |
39 |
ttctgcttgtgctcatctaggtgctttggatattgg |
74 |
Q |
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| T |
19243370 |
ttctgcttgtgctcatctaggtgctttggatgttgg |
19243405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 46 - 200
Target Start/End: Complemental strand, 32553236 - 32553092
Alignment:
| Q |
46 |
tgtgctcatctaggtgctttggatattggtgtttggattcatcgatatttgaatcgatcgaagctagtaccattgagtgttcgtttgaatactagtttat |
145 |
Q |
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| T |
32553236 |
tgtgctcatctaggtgctttggatattggtgtttggatccatcgatgtttgaatcgaataaagctagtaacgttgactgttcgtttgaggactagttt-- |
32553139 |
T |
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| Q |
146 |
tagatatgtatgcaaaatgtgggaatttggaattggcgaaaagattatttgattc |
200 |
Q |
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| T |
32553138 |
--------tacgctaaatgtgggaatttgaaattggcgaaaagattattcgattc |
32553092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 46 - 200
Target Start/End: Complemental strand, 39174058 - 39173914
Alignment:
| Q |
46 |
tgtgctcatctaggtgctttggatattggtgtttggattcatcgatatttgaatcgatcgaagctagtaccattgagtgttcgtttgaatactagtttat |
145 |
Q |
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| T |
39174058 |
tgtgctcatctaggtgctttggatattggtgtttggatccatcgatgtttgaatcgaataaagctagtaacgttgactgttcgtttgaggactagttt-- |
39173961 |
T |
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| Q |
146 |
tagatatgtatgcaaaatgtgggaatttggaattggcgaaaagattatttgattc |
200 |
Q |
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| T |
39173960 |
--------tacgctaaatgtgggaatttgaaattggcgaaaagattattcgattc |
39173914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 35800259 - 35800327
Alignment:
| Q |
60 |
tgctttggatattggtgtttggattcatcgatatttgaatcgatcgaagctagtaccattgagtgttcg |
128 |
Q |
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| T |
35800259 |
tgctttggatattggtgtttggatccatcgatgtttgaatcgaataaagctagtaacgttgattgttcg |
35800327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 23233012 - 23232915
Alignment:
| Q |
46 |
tgtgctcatctaggtgctttggatattggtgtttggattcatcgatatttgaatcgatcgaagctagtaccattgagtgttcgtttgaatactagttt |
143 |
Q |
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| T |
23233012 |
tgtgctcatctaggtgctttggatattggtgtttggatccatcgatgtttgaattgattaaagctagtaaagttgactgttcgtttgaggactagttt |
23232915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 23232887 - 23232823
Alignment:
| Q |
136 |
actagtttattagatatgtatgcaaaatgtgggaatttggaattggcgaaaagattatttgattc |
200 |
Q |
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| T |
23232887 |
actagtttattagatatgtacgctaaatgtgggaatttgaaattggcgaaaagattattcgattc |
23232823 |
T |
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