View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5480_low_4 (Length: 224)

Name: NF5480_low_4
Description: NF5480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5480_low_4
NF5480_low_4
[»] chr2 (11 HSPs)
chr2 (45-214)||(25559280-25559449)
chr2 (45-214)||(40556938-40557107)
chr2 (40-203)||(40559069-40559232)
chr2 (49-159)||(25561663-25561773)
chr2 (45-129)||(1147747-1147831)
chr2 (45-129)||(1149222-1149306)
chr2 (59-102)||(42729581-42729624)
chr2 (45-96)||(1309396-1309447)
chr2 (57-102)||(12095286-12095331)
chr2 (58-102)||(102417-102461)
chr2 (16-44)||(26236132-26236160)
[»] chr4 (9 HSPs)
chr4 (49-214)||(37106199-37106364)
chr4 (39-151)||(39056417-39056529)
chr4 (59-162)||(36846560-36846663)
chr4 (45-160)||(1521197-1521312)
chr4 (45-151)||(35348795-35348901)
chr4 (45-159)||(26631223-26631337)
chr4 (45-150)||(26629789-26629894)
chr4 (45-150)||(1519809-1519914)
chr4 (82-150)||(44499997-44500065)
[»] chr5 (13 HSPs)
chr5 (45-214)||(42641959-42642128)
chr5 (45-150)||(41144531-41144636)
chr5 (68-189)||(41143261-41143382)
chr5 (45-160)||(10735761-10735876)
chr5 (40-159)||(4124749-4124869)
chr5 (59-159)||(10736942-10737042)
chr5 (45-150)||(35047417-35047522)
chr5 (45-128)||(28702567-28702650)
chr5 (60-102)||(17687899-17687941)
chr5 (45-126)||(35081474-35081555)
chr5 (60-148)||(4127268-4127356)
chr5 (66-150)||(13519491-13519575)
chr5 (12-44)||(29445150-29445182)
[»] chr6 (9 HSPs)
chr6 (46-151)||(11968489-11968594)
chr6 (45-129)||(30231476-30231560)
chr6 (45-129)||(136625-136709)
chr6 (45-129)||(138240-138324)
chr6 (45-129)||(146261-146345)
chr6 (45-129)||(30232940-30233024)
chr6 (40-102)||(7312343-7312405)
chr6 (59-104)||(14264062-14264107)
chr6 (16-44)||(34884562-34884590)
[»] chr7 (11 HSPs)
chr7 (45-129)||(26135639-26135723)
chr7 (59-159)||(43442767-43442867)
chr7 (45-151)||(10955843-10955949)
chr7 (82-149)||(3332171-3332238)
chr7 (46-128)||(10957189-10957271)
chr7 (45-160)||(669391-669506)
chr7 (45-129)||(26146741-26146825)
chr7 (59-102)||(44554827-44554870)
chr7 (104-150)||(2414802-2414848)
chr7 (16-44)||(1250551-1250579)
chr7 (46-102)||(43441345-43441401)
[»] chr1 (9 HSPs)
chr1 (44-158)||(26287789-26287903)
chr1 (45-160)||(26286410-26286525)
chr1 (44-159)||(48528901-48529016)
chr1 (45-160)||(5613088-5613203)
chr1 (45-159)||(5611724-5611838)
chr1 (45-129)||(48527532-48527616)
chr1 (82-157)||(9226221-9226296)
chr1 (59-102)||(48492741-48492784)
chr1 (45-150)||(28050319-28050424)
[»] chr8 (9 HSPs)
chr8 (40-159)||(31844361-31844480)
chr8 (45-160)||(31845797-31845912)
chr8 (46-160)||(43202095-43202209)
chr8 (88-165)||(42793740-42793817)
chr8 (87-150)||(38697908-38697971)
chr8 (40-159)||(43203284-43203403)
chr8 (45-150)||(28291293-28291398)
chr8 (57-98)||(35945505-35945546)
chr8 (82-150)||(39174740-39174808)
[»] chr3 (4 HSPs)
chr3 (59-150)||(37416451-37416542)
chr3 (59-150)||(37415007-37415098)
chr3 (83-156)||(10301825-10301898)
chr3 (12-44)||(14262037-14262069)
[»] scaffold0148 (1 HSPs)
scaffold0148 (58-102)||(15911-15955)
[»] scaffold0219 (1 HSPs)
scaffold0219 (59-160)||(8193-8294)


Alignment Details
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 45 - 214
Target Start/End: Original strand, 25559280 - 25559449
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgtt 144  Q
    ||||||||||||||||||||||||||||| | |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  25559280 ggcttaattcgatatttggtcccctaactaatttgttgtttttattttggtcccataagttctaaaatcaacgatttggtccctttgcttttgctccgtc 25559379  T
Q  145 agtcaatatggtcccttctgtcaaatccttctctttcccgttagttattgcacacgtggacgatcctatg 214  Q
    |||||| ||||||||||| ||||||| |||||||||||||| |||| |||||||||||||||||||||||    
T  25559380 agtcaagatggtcccttccgtcaaatgcttctctttcccgtcagttcttgcacacgtggacgatcctatg 25559449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 45 - 214
Target Start/End: Original strand, 40556938 - 40557107
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgtt 144  Q
    ||||||||| |||||||||||| |||| | | |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| ||||     
T  40556938 ggcttaatttgatatttggtcctctaattaatttgttgttttcattttggtctcataagttctaaaatcaacgatttggtccctttgcttttgccccgtc 40557037  T
Q  145 agtcaatatggtcccttctgtcaaatccttctctttcccgttagttattgcacacgtggacgatcctatg 214  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||    
T  40557038 agtcaatatggtcccttctgtcaaatgcttctatttcccgttagttcttgcacacgtggacgatcctatg 40557107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 40 - 203
Target Start/End: Complemental strand, 40559232 - 40559069
Alignment:
Q  40 attagggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgct 139  Q
    |||| |||||||||||||||||||||| |||||| | |||||||||||||||| ||||||||||||||||||||||  ||||||||||||| |||||||     
T  40559232 attaaggcttaattcgatatttggtcctctaactaatttgttgttttcattttggtcccataagttctaaaatcaataatttggtccctttgcttttgcc 40559133  T
Q  140 ccgttagtcaatatggtcccttctgtcaaatccttctctttcccgttagttattgcacacgtgg 203  Q
     ||| |||||||||||||||||| ||||||| ||||| ||||||||||||| ||||||||||||    
T  40559132 tcgtcagtcaatatggtcccttccgtcaaatgcttctatttcccgttagttcttgcacacgtgg 40559069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 25561773 - 25561663
Alignment:
Q  49 taattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgttagtc 148  Q
    ||||||||||||||||| ||||||| | |||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||| | ||||    
T  25561773 taattcgatatttggtcgcctaactaatttgttgttttcattttggtcccataaattctaaaatcaacgatttggtccctttgcttttgctccatcagtc 25561674  T
Q  149 aatatggtccc 159  Q
    |||||||||||    
T  25561673 aatatggtccc 25561663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 1147747 - 1147831
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtccctt 129  Q
    ||||||||| ||  ||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||| || ||||||||    
T  1147747 ggcttaattggacttttggtcccctaactaatttgttgttttcattttagtcccataacttctaaaatcaacgtttcggtccctt 1147831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 1149306 - 1149222
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtccctt 129  Q
    ||||||||| ||  ||||||||||||||| | |||||||||||||||| ||||||||| |||||||||||||| |||||||||||    
T  1149306 ggcttaattggacttttggtcccctaactaatttgttgttttcattttggtcccataacttctaaaatcaacgttttggtccctt 1149222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 42729581 - 42729624
Alignment:
Q  59 tttggtcccctaacttaattgttgttttcattttagtcccataa 102  Q
    ||||||||| |||||||||||||||||||||||| |||||||||    
T  42729581 tttggtcccataacttaattgttgttttcattttggtcccataa 42729624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 1309396 - 1309447
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtc 96  Q
    ||||||||| ||| ||||||||||||| | | ||||||||||||||||||||    
T  1309396 ggcttaattggatttttggtcccctaagtaatttgttgttttcattttagtc 1309447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 12095286 - 12095331
Alignment:
Q  57 tatttggtcccctaacttaattgttgttttcattttagtcccataa 102  Q
    ||||||||||||||||||| || ||||||||||||| ||| |||||    
T  12095286 tatttggtcccctaacttatttattgttttcattttggtctcataa 12095331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 102461 - 102417
Alignment:
Q  58 atttggtcccctaacttaattgttgttttcattttagtcccataa 102  Q
    |||||||||||||||| | || ||||||||||||| |||||||||    
T  102461 atttggtcccctaactaatttcttgttttcattttggtcccataa 102417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 26236132 - 26236160
Alignment:
Q  16 aatatctcttttcgtccttgtaatattag 44  Q
    |||||||||||||||||||||||||||||    
T  26236132 aatatctcttttcgtccttgtaatattag 26236160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 9e-63; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 49 - 214
Target Start/End: Complemental strand, 37106364 - 37106199
Alignment:
Q  49 taattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgttagtc 148  Q
    ||||||||||||||||||||||||| | |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  37106364 taattcgatatttggtcccctaactaatttgttgtttttattttggtcccataagttctaaaatcaacgatttggtccctttgcttttgctccgtcagtc 37106265  T
Q  149 aatatggtcccttctgtcaaatccttctctttcccgttagttattgcacacgtggacgatcctatg 214  Q
    |||||||||||||| ||||||  ||| ||||||||||||||| |||||||||||||||||||||||    
T  37106264 aatatggtcccttccgtcaaaagcttgtctttcccgttagttcttgcacacgtggacgatcctatg 37106199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 39056417 - 39056529
Alignment:
Q  39 tattagggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgc 138  Q
    ||||| ||||||||| ||  ||||||||| ||| | | |||||||||||||||| ||| ||||| || ||||||||||| ||| |||||| || ||||||    
T  39056417 tattatggcttaattggacttttggtcccttaagtaatttgttgttttcattttggtctcataatttgtaaaatcaacgttttagtccctcttgttttgc 39056516  T
Q  139 tccgttagtcaat 151  Q
    |||||||||||||    
T  39056517 tccgttagtcaat 39056529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 162
Target Start/End: Complemental strand, 36846663 - 36846560
Alignment:
Q  59 tttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgttagtcaatatggtcc 158  Q
    ||||| ||||||| | | |||||||||||||||| ||||||||| |  ||||||||||  |||||||||| || |||||||||||| |||||| ||||||    
T  36846663 tttggccccctaagtaatttgttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttcgtcaatttggtcc 36846564  T
Q  159 cttc 162  Q
    ||||    
T  36846563 cttc 36846560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 1521312 - 1521197
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgtt 144  Q
    ||||||||| ||  |||||||| |||||| | ||||||||||||||||  |||||||| |  ||||||||||  ||||||||||   ||||| |||||||    
T  1521312 ggcttaattggacttttggtcctctaactaatttgttgttttcattttgatcccataattcgtaaaatcaacattttggtccctcaacttttactccgtt 1521213  T
Q  145 agtcaatatggtccct 160  Q
    ||||||| ||||||||    
T  1521212 agtcaatttggtccct 1521197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 35348795 - 35348901
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgtt 144  Q
    ||||||||| ||  ||||||||| ||| | | |||||||||||||||| ||||||||| || ||||||||||| ||| |||||| || ||||||| |||     
T  35348795 ggcttaattggacttttggtcccttaagtaatttgttgttttcattttggtcccataacttgtaaaatcaacgttttagtccctcttgttttgcttcgtc 35348894  T
Q  145 agtcaat 151  Q
    |||||||    
T  35348895 agtcaat 35348901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 159
Target Start/End: Complemental strand, 26631337 - 26631223
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgtt 144  Q
    ||||||||| ||  |||||||||| || | | ||||| |||||||||| ||| ||||| |  ||||||||||  |||||| ||| || ||||||||||||    
T  26631337 ggcttaattggacttttggtcccccaagtaatttgttattttcattttggtctcataactcgtaaaatcaacattttggttcctcttgttttgctccgtt 26631238  T
Q  145 agtcaatatggtccc 159  Q
    ||||||| |||||||    
T  26631237 agtcaatttggtccc 26631223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 26629789 - 26629894
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgtt 144  Q
    ||||||||| ||  ||||||||| ||| | |||||||||||||||||| ||||||||| |  ||||||||||  ||||||||||   | |||||||||||    
T  26629789 ggcttaattggacttttggtcccttaagtaaattgttgttttcattttggtcccataactcataaaatcaacattttggtccctcaacgtttgctccgtt 26629888  T
Q  145 agtcaa 150  Q
    | ||||    
T  26629889 aatcaa 26629894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 1519809 - 1519914
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgtt 144  Q
    ||||||||| ||  ||||||||||||||| | |||| ||||||||||| ||||||||| |  ||||||||||   |||||||||   | ||||||| |||    
T  1519809 ggcttaattggacttttggtcccctaactaatttgtcgttttcattttggtcccataattcgtaaaatcaacatattggtccctcaacatttgctctgtt 1519908  T
Q  145 agtcaa 150  Q
    ||||||    
T  1519909 agtcaa 1519914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 44500065 - 44499997
Alignment:
Q  82 gttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgttagtcaa 150  Q
    |||||| |||| ||||||||| |  |||||||| |  |||||||||||  |||||||||||||||||||    
T  44500065 gttttcgttttggtcccataactcttaaaatcatcattttggtcccttaacttttgctccgttagtcaa 44499997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 45 - 214
Target Start/End: Complemental strand, 42642128 - 42641959
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgtt 144  Q
    |||||||||||||||||||||| |||||| | || |||||||||||||  ||||||||||||||||||||||||||| |||||||| ||||||| ||||     
T  42642128 ggcttaattcgatatttggtcctctaactaatttattgttttcattttgatcccataagttctaaaatcaacgatttagtccctttgcttttgccccgtc 42642029  T
Q  145 agtcaatatggtcccttctgtcaaatccttctctttcccgttagttattgcacacgtggacgatcctatg 214  Q
    |||||||||| ||||||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||||    
T  42642028 agtcaatatgatcccttccgtcaaatgcttctatttcccgttagttcttgcacacgtggacgatcctatg 42641959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 41144636 - 41144531
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgtt 144  Q
    ||||||||| ||| ||||||||||||| | | |||||||||||||||| ||||||||| |||||||||||||| ||||||||||||  ||||||||||||    
T  41144636 ggcttaattggatttttggtcccctaattaatttgttgttttcattttggtcccataaattctaaaatcaacgttttggtccctttgattttgctccgtt 41144537  T
Q  145 agtcaa 150  Q
    ||||||    
T  41144536 agtcaa 41144531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 41143261 - 41143382
Alignment:
Q  68 ctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgttagtcaatatggtcccttctgtca 167  Q
    |||||| | |||||||||| ||||| ||| |||||||||||||||||||  ||||||||||||  |||||||| || |||||||||||||| ||| ||||    
T  41143261 ctaactaatttgttgtttttattttggtctcataagttctaaaatcaacattttggtccctttgtttttgctctgtcagtcaatatggtcctttccgtca 41143360  T
Q  168 aatccttctctttcccgttagt 189  Q
    |||  |||||||||||||||||    
T  41143361 aatggttctctttcccgttagt 41143382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 160
Target Start/End: Original strand, 10735761 - 10735876
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgtt 144  Q
    ||||||||| ||  ||||||||||||| | | |  ||||||||||||| ||||||||| |  ||||||||||| |||||||||| || ||||||||||||    
T  10735761 ggcttaattggacttttggtcccctaagtaattacttgttttcattttggtcccataactcgtaaaatcaacgttttggtccctcttgttttgctccgtt 10735860  T
Q  145 agtcaatatggtccct 160  Q
    |||||| | |||||||    
T  10735861 agtcaaaaaggtccct 10735876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 4124749 - 4124869
Alignment:
Q  40 attagggcttaattcgatatttggtcccctaacttaattg-ttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgc 138  Q
    |||| ||||||||| ||  |||||||| |||| | ||||  ||||||||||||| || |||||| |  ||||||||||| ||||||||||||| ||||||    
T  4124749 attatggcttaattggacttttggtcctctaagtaaatttcttgttttcattttggttccataattcataaaatcaacgttttggtcccttttgttttgc 4124848  T
Q  139 tccgttagtcaatatggtccc 159  Q
    ||||||||| ||| |||||||    
T  4124849 tccgttagttaatttggtccc 4124869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 10737042 - 10736942
Alignment:
Q  59 tttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgttagtcaatatggtcc 158  Q
    ||||||||||||| | | || ||||||||||||| ||||||||| |  ||||||||||  |||||||||| || ||||||||||||| ||||| ||||||    
T  10737042 tttggtcccctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggtcc 10736943  T
Q  159 c 159  Q
    |    
T  10736942 c 10736942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 35047417 - 35047522
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgtt 144  Q
    ||||||||| ||| |||| |||||||| ||| ||  |||||||||||| ||||||||| |  ||||||||||| |   ||||||||| ||||||||||||    
T  35047417 ggcttaattggatttttgatcccctaagttatttcgtgttttcattttggtcccataactcgtaaaatcaacgttcaagtcccttttgttttgctccgtt 35047516  T
Q  145 agtcaa 150  Q
    ||||||    
T  35047517 agtcaa 35047522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 28702567 - 28702650
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtccct 128  Q
    ||||||||| ||  ||| ||||||||| | | |||||||||||||||| ||||||||| |  |||||| |||| ||||||||||    
T  28702567 ggcttaattggactttttgtcccctaagtaatttgttgttttcattttggtcccataactcgtaaaattaacgttttggtccct 28702650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 17687899 - 17687941
Alignment:
Q  60 ttggtcccctaacttaattgttgttttcattttagtcccataa 102  Q
    |||||||||||| ||| |||||||| |||||||||||||||||    
T  17687899 ttggtcccctaatttatttgttgttgtcattttagtcccataa 17687941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 35081555 - 35081474
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgtt-gttttcattttagtcccataagttctaaaatcaacgatttggtcc 126  Q
    ||||||||| ||  ||||||||||||| | ||||||| ||||||||||| ||||||||| |  ||||||||||| ||||||||    
T  35081555 ggcttaattggacttttggtcccctaagt-aattgtttgttttcattttggtcccataactcgtaaaatcaacgttttggtcc 35081474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 4127356 - 4127268
Alignment:
Q  60 ttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgttagtc 148  Q
    ||||||| |||| | | |||||||||||||||| ||||||||| |  |||||| |||| |||||||| |   | |||||||||||||||    
T  4127356 ttggtcctctaagtaatttgttgttttcattttggtcccataactcgtaaaattaacgttttggtccttcaacgtttgctccgttagtc 4127268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 13519491 - 13519575
Alignment:
Q  66 ccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgttagtcaa 150  Q
    |||||||| | || |||||| |||||||||||||||| |   |||||||||  |||||||| | || |||||||||||| |||||    
T  13519491 ccctaactaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccttcttgttttgctccgtttgtcaa 13519575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 29445182 - 29445150
Alignment:
Q  12 ggttaatatctcttttcgtccttgtaatattag 44  Q
    ||||||||||||||||||||| |||||||||||    
T  29445182 ggttaatatctcttttcgtccctgtaatattag 29445150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 46 - 151
Target Start/End: Complemental strand, 11968594 - 11968489
Alignment:
Q  46 gcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgtta 145  Q
    |||||||| ||| ||||||||||||||| | |||||||||||||||| ||| |||||  | |||||| |||| ||||||||||||| |||||||  ||||    
T  11968594 gcttaattggatttttggtcccctaactaatttgttgttttcattttggtctcataacctgtaaaattaacgttttggtcccttttgttttgctttgtta 11968495  T
Q  146 gtcaat 151  Q
    ||||||    
T  11968494 gtcaat 11968489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 30231476 - 30231560
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtccctt 129  Q
    ||||||||| ||  ||||||||| ||||| | |||||||||||||||| ||||||||| |||||||||||||| |||||||||||    
T  30231476 ggcttaattggacttttggtcccttaactaatttgttgttttcattttggtcccataacttctaaaatcaacgttttggtccctt 30231560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 136625 - 136709
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtccctt 129  Q
    ||||||||| ||  ||| ||||||||||| | |||||||||| ||||||||||||||| || ||||||||||| |||||||||||    
T  136625 ggcttaattggacttttcgtcccctaactaatttgttgtttttattttagtcccataacttttaaaatcaacgttttggtccctt 136709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 138324 - 138240
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtccctt 129  Q
    ||||||||| ||  ||||||||||||||| | ||| |||||||||||| ||||||||| |||||||||||||| || ||||||||    
T  138324 ggcttaatttgacttttggtcccctaactaatttgatgttttcattttggtcccataacttctaaaatcaacgtttcggtccctt 138240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 146345 - 146261
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtccctt 129  Q
    ||||||||| ||  ||||||||||||||| | ||| |||||||||||| ||||||||| |||||||||||||| || ||||||||    
T  146345 ggcttaatttgacttttggtcccctaactaatttgatgttttcattttggtcccataacttctaaaatcaacgtttcggtccctt 146261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 30233024 - 30232940
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtccctt 129  Q
    ||||||||| ||  |||||||||||||||   |||||||||||||||| ||||||||| |||||||||||||| || ||||||||    
T  30233024 ggcttaattggacttttggtcccctaactagtttgttgttttcattttggtcccataacttctaaaatcaacgtttcggtccctt 30232940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 7312405 - 7312343
Alignment:
Q  40 attagggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataa 102  Q
    ||||||||||||||  ||||||||||  |||||||| |||||||||| ||||| ||| |||||    
T  7312405 attagggcttaattgaatatttggtcttctaacttatttgttgtttttattttggtctcataa 7312343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 14264107 - 14264062
Alignment:
Q  59 tttggtcccctaacttaattgttgttttcattttagtcccataagt 104  Q
    ||||||||| ||||||||||| |||||||| ||| |||||||||||    
T  14264107 tttggtcccataacttaattgctgttttcaatttggtcccataagt 14264062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 34884562 - 34884590
Alignment:
Q  16 aatatctcttttcgtccttgtaatattag 44  Q
    |||||||||||||||||||||||||||||    
T  34884562 aatatctcttttcgtccttgtaatattag 34884590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 26135639 - 26135723
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtccctt 129  Q
    ||||||||| ||  ||||||||||||||| | ||| |||||||||||| ||||||||| |||||||||||||| |||||||||||    
T  26135639 ggcttaattggacttttggtcccctaactaatttgatgttttcattttggtcccataacttctaaaatcaacgttttggtccctt 26135723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 43442867 - 43442767
Alignment:
Q  59 tttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgttagtcaatatggtcc 158  Q
    ||||||||||||| | | ||||||||||||| || ||||||||| |  ||||||||||  |||||||||| || ||||||||||||||||||| ||||||    
T  43442867 tttggtcccctaagtaatttgttgttttcatattggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttagtcaatttggtcc 43442768  T
Q  159 c 159  Q
    |    
T  43442767 c 43442767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 10955843 - 10955949
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgtt 144  Q
    ||||||||| ||  ||||||||| ||| | | ||||||||||||||||  | |||||| || ||||||||||| ||| |||||| || ||||||||||||    
T  10955843 ggcttaattggacttttggtcccttaagtaatttgttgttttcattttgattccataacttataaaatcaacgttttagtccctcttgttttgctccgtt 10955942  T
Q  145 agtcaat 151  Q
    |||||||    
T  10955943 agtcaat 10955949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 3332238 - 3332171
Alignment:
Q  82 gttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgttagtca 149  Q
    ||||||||||| ||||||||| ||||||||||| | |||||||||||   | ||||||||||||||||    
T  3332238 gttttcattttggtcccataaattctaaaatcatcaatttggtccctcaacgtttgctccgttagtca 3332171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 10957271 - 10957189
Alignment:
Q  46 gcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtccct 128  Q
    |||||||| ||  ||||||||||||| | | |||||||||||||||| ||||||||| |  |||||| |||| ||||||||||    
T  10957271 gcttaattggacttttggtcccctaagtaatttgttgttttcattttggtcccataactcgtaaaattaacgttttggtccct 10957189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 669506 - 669391
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgtt-gttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgt 143  Q
    ||||||||| ||| ||||||||||||| | |||| |  ||||||||||| ||||||||| |  ||||||||||  || |||||||||| ||||||| |||    
T  669506 ggcttaattggatttttggtcccctaagt-aattatcagttttcattttggtcccataattcgtaaaatcaacatttcggtcccttttattttgcttcgt 669408  T
Q  144 tagtcaatatggtccct 160  Q
    | ||||| | |||||||    
T  669407 ttgtcaaaaaggtccct 669391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 26146825 - 26146741
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtccctt 129  Q
    ||||||||| ||  ||||||||||||||| | ||||||||||||||||  ||| |||| || ||||||||| | || ||||||||    
T  26146825 ggcttaattggacttttggtcccctaactaatttgttgttttcattttgatcctataaattttaaaatcaatgtttcggtccctt 26146741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 44554870 - 44554827
Alignment:
Q  59 tttggtcccctaacttaattgttgttttcattttagtcccataa 102  Q
    |||||||| |||||||| |||||||||||||||| |||||||||    
T  44554870 tttggtcctctaacttatttgttgttttcattttggtcccataa 44554827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 2414802 - 2414848
Alignment:
Q  104 ttctaaaatcaacgatttggtcccttttcttttgctccgttagtcaa 150  Q
    |||||||| ||||| ||||||||||||  ||||||||||||||||||    
T  2414802 ttctaaaaccaacgttttggtccctttggttttgctccgttagtcaa 2414848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 1250579 - 1250551
Alignment:
Q  16 aatatctcttttcgtccttgtaatattag 44  Q
    |||||||||||||||||||||||||||||    
T  1250579 aatatctcttttcgtccttgtaatattag 1250551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 43441345 - 43441401
Alignment:
Q  46 gcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataa 102  Q
    ||||| || ||| ||||||||||||| | |||||||||||||||||| ||| |||||    
T  43441345 gcttagttggatttttggtcccctaagtaaattgttgttttcattttggtctcataa 43441401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 26287903 - 26287789
Alignment:
Q  44 gggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgt 143  Q
    |||||||||| ||  |||||||| |||||| | |||||||||||||||| ||||||||| |  ||||||||||  ||||||||||   ||||| ||||||    
T  26287903 gggcttaattggacttttggtcctctaactaatttgttgttttcattttggtcccataattcgtaaaatcaacattttggtccctcaacttttactccgt 26287804  T
Q  144 tagtcaatatggtcc 158  Q
    |||||||| ||||||    
T  26287803 tagtcaatttggtcc 26287789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 160
Target Start/End: Original strand, 26286410 - 26286525
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgtt 144  Q
    ||||||||| ||  ||||||||||||||| | |||| ||||||||||| ||||||||| |  ||||||||||   |||||||||   | |||||||||||    
T  26286410 ggcttaattggacttttggtcccctaactaatttgtcgttttcattttggtcccataattcgtaaaatcaacatattggtccctcaacgtttgctccgtt 26286509  T
Q  145 agtcaatatggtccct 160  Q
    |||||| | |||||||    
T  26286510 agtcaaaaaggtccct 26286525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 159
Target Start/End: Complemental strand, 48529016 - 48528901
Alignment:
Q  44 gggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgt 143  Q
    |||||||||| ||  |||||||||| || | | ||||||||| |||||| ||||||||| |  ||||||||||  ||| |||||| || |||| ||||||    
T  48529016 gggcttaattggacttttggtcccccaagtaatttgttgtttacattttggtcccataactcgtaaaatcaacattttagtccctcttatttttctccgt 48528917  T
Q  144 tagtcaatatggtccc 159  Q
    |||||||| |||||||    
T  48528916 tagtcaatttggtccc 48528901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 5613203 - 5613088
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgtt 144  Q
    ||||||||| ||  |||| |||||||||| | |||| ||||||||||| ||||||||| |  ||||||||||   |||||||||   | |||||||||||    
T  5613203 ggcttaattggacttttgatcccctaactaatttgtcgttttcattttggtcccataattcgtaaaatcaacatattggtccctcaacgtttgctccgtt 5613104  T
Q  145 agtcaatatggtccct 160  Q
    |||||| | |||||||    
T  5613103 agtcaaaaaggtccct 5613088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 159
Target Start/End: Original strand, 5611724 - 5611838
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgtt 144  Q
    ||||||||| ||  ||||||||  ||||| | |||||||||||||||| ||||||||| || ||||||||||  |||||| |||   ||||| ||| |||    
T  5611724 ggcttaattggacttttggtcctttaactaatttgttgttttcattttggtcccataatttgtaaaatcaacattttggtgcctcaacttttactctgtt 5611823  T
Q  145 agtcaatatggtccc 159  Q
    ||| ||| |||||||    
T  5611824 agtaaatttggtccc 5611838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 48527532 - 48527616
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtccctt 129  Q
    ||||||||| ||| ||||||||||||| | | ||||||||| |||||| ||||||||| |  |||||| |||  |||||||||||    
T  48527532 ggcttaattggatttttggtcccctaagtaatttgttgtttacattttggtcccataactcgtaaaattaacattttggtccctt 48527616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 9226296 - 9226221
Alignment:
Q  82 gttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgttagtcaatatggtc 157  Q
    ||||||||||| ||||||||| || |||||||| | |||||| |||||  ||||| |||||||| ||||| |||||    
T  9226296 gttttcattttggtcccataaattttaaaatcatcaatttggccccttaacttttactccgttattcaatttggtc 9226221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 48492741 - 48492784
Alignment:
Q  59 tttggtcccctaacttaattgttgttttcattttagtcccataa 102  Q
    |||||||| |||||||| |||||||||||||||| |||||||||    
T  48492741 tttggtcctctaacttatttgttgttttcattttggtcccataa 48492784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 28050319 - 28050424
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgt-tgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgt 143  Q
    ||||||||| || |||||||||| ||| | |||| | ||||| |||||| ||||||||| || ||||||| ||  ||||||||| ||  |||||||||||    
T  28050319 ggcttaattagacatttggtcccttaaat-aattatgtgtttacattttggtcccataaattgtaaaatccacattttggtccccttgattttgctccgt 28050417  T
Q  144 tagtcaa 150  Q
    |||||||    
T  28050418 tagtcaa 28050424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 31844361 - 31844480
Alignment:
Q  40 attagggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgct 139  Q
    |||| ||||||||| ||  |||||||||  || | | |||||||||||||||||||||| ||| |  |||||| |||  |||||||||| || |||||||    
T  31844361 attatggcttaattggacttttggtccctaaagtaatttgttgttttcattttagtcccgtaactcgtaaaattaacattttggtccctcttgttttgct 31844460  T
Q  140 ccgttagtcaatatggtccc 159  Q
    |||||||||||| |||||||    
T  31844461 ccgttagtcaatttggtccc 31844480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 31845912 - 31845797
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgtt 144  Q
    ||||||||| ||  ||||||||| ||| | |||||||||||||||||| ||||||||| |  ||||||||||  ||||||||||   | |||||||||||    
T  31845912 ggcttaattggagttttggtcccttaagtaaattgttgttttcattttggtcccataactcataaaatcaacattttggtccctcaacgtttgctccgtt 31845813  T
Q  145 agtcaatatggtccct 160  Q
    | |||| | |||||||    
T  31845812 aatcaaaaaggtccct 31845797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 43202095 - 43202209
Alignment:
Q  46 gcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgtta 145  Q
    |||||||| ||  |||| |||||||| | | |||||||||||||||||||||||||| |  ||||||||||  ||||||||||   | ||||| ||||||    
T  43202095 gcttaattggacttttgatcccctaagtaatttgttgttttcattttagtcccataactcgtaaaatcaacattttggtccctcaacgtttgcaccgtta 43202194  T
Q  146 gtcaatatggtccct 160  Q
    ||||| | |||||||    
T  43202195 gtcaaaaaggtccct 43202209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 42793740 - 42793817
Alignment:
Q  88 attttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgttagtcaatatggtcccttctgt 165  Q
    ||||| ||||||||| || |||||| |||  |||||||||| || |||||||||||||||||| | |||||| |||||    
T  42793740 attttggtcccataaattgtaaaattaacattttggtccctcttgttttgctccgttagtcaaaaaggtcccctctgt 42793817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 38697908 - 38697971
Alignment:
Q  87 cattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgttagtcaa 150  Q
    |||||| || |||||| || ||||||||||  |||||||||| || ||||||||||||||||||    
T  38697908 cattttggttccataacttgtaaaatcaacattttggtccctcttgttttgctccgttagtcaa 38697971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 159
Target Start/End: Complemental strand, 43203403 - 43203284
Alignment:
Q  40 attagggcttaattcgatatttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgct 139  Q
    |||| ||||||||| ||  ||||||||  ||| | | ||||| |||||||||| ||||||||| |  ||||||||||  ||  |||||| || |||||||    
T  43203403 attaaggcttaattggacttttggtccattaaataatttgttattttcattttggtcccataactcgtaaaatcaacatttccgtccctcttattttgct 43203304  T
Q  140 ccgttagtcaatatggtccc 159  Q
    |||| ||||||| |||||||    
T  43203303 ccgtcagtcaatttggtccc 43203284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 28291293 - 28291398
Alignment:
Q  45 ggcttaattcgatatttggtcccctaacttaattgtt-gttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgt 143  Q
    ||||||||| ||| ||||||||||||| | |||| |  ||||||||||| ||||||||| |  ||||||||||  || ||||||| || ||||||| |||    
T  28291293 ggcttaattggatttttggtcccctaagt-aattatcagttttcattttggtcccataattcgtaaaatcaacatttcggtccctcttattttgcttcgt 28291391  T
Q  144 tagtcaa 150  Q
    |||||||    
T  28291392 tagtcaa 28291398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 35945546 - 35945505
Alignment:
Q  57 tatttggtcccctaacttaattgttgttttcattttagtccc 98  Q
    ||||||||||| ||||||| || |||||||||||||||||||    
T  35945546 tatttggtcccttaacttattttttgttttcattttagtccc 35945505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 39174808 - 39174740
Alignment:
Q  82 gttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgttagtcaa 150  Q
    ||||||||||| |||| ||||||| |||||||| |  ||||||||||   |||||||||||||| ||||    
T  39174808 gttttcattttggtcctataagttttaaaatcatcattttggtccctcaacttttgctccgttattcaa 39174740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 37416542 - 37416451
Alignment:
Q  59 tttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgttagtcaa 150  Q
    ||||||||||||| | | |||||||||||||||| || |||||| |  ||||||||||  |||||||||| || ||||||||||||||||||    
T  37416542 tttggtcccctaagtaatttgttgttttcattttggttccataactcataaaatcaacattttggtccctcttgttttgctccgttagtcaa 37416451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 37415007 - 37415098
Alignment:
Q  59 tttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgttagtcaa 150  Q
    ||||||||| ||| | | ||||| |||||||||| ||| ||||| |  ||||||||||  |||||| ||| || ||||||||||||||||||    
T  37415007 tttggtcccttaagtaatttgttattttcattttggtctcataactcgtaaaatcaacattttggttcctcttgttttgctccgttagtcaa 37415098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 10301898 - 10301825
Alignment:
Q  83 ttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgttagtcaatatggt 156  Q
    |||||||||| |||||||||||  |||||||| | || |||||| |   |||||||||||||||||||| ||||    
T  10301898 ttttcattttggtcccataagtcttaaaatcatcaatatggtccttcaacttttgctccgttagtcaatttggt 10301825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 14262037 - 14262069
Alignment:
Q  12 ggttaatatctcttttcgtccttgtaatattag 44  Q
    ||||||||||||||||||||| |||||||||||    
T  14262037 ggttaatatctcttttcgtccctgtaatattag 14262069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 15955 - 15911
Alignment:
Q  58 atttggtcccctaacttaattgttgttttcattttagtcccataa 102  Q
    ||||||||| |||||||| |||||||||||||||| |||||||||    
T  15955 atttggtcctctaacttatttgttgttttcattttggtcccataa 15911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 8294 - 8193
Alignment:
Q  59 tttggtcccctaacttaattgttgttttcattttagtcccataagttctaaaatcaacgatttggtcccttttcttttgctccgttagtcaatatggtcc 158  Q
    ||||||||||||| | | |  |||||| |||||| ||||||||| |  ||||||||||  |||||||||| |  |||| |||||||||||||| || |||    
T  8294 tttggtcccctaagtaattctttgtttacattttggtcccataactcgtaaaatcaacattttggtccctctcgttttactccgttagtcaatttgatcc 8195  T
Q  159 ct 160  Q
    ||    
T  8194 ct 8193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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