View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5481_high_3 (Length: 445)
Name: NF5481_high_3
Description: NF5481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5481_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 10 - 429
Target Start/End: Complemental strand, 45561934 - 45561515
Alignment:
| Q |
10 |
aataatataccgatcacttaggttcgatgtagcctccatgactttgttaagaaggtgagaagtacctccattatcagtgaaatggacttgcttcttagat |
109 |
Q |
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| T |
45561934 |
aataatataccgatcacttaggttcgatgtagcctccatgactttgttaagaaggtgagaagtacctccattatcagtgaaatggacttgcttcttagat |
45561835 |
T |
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| Q |
110 |
tttctgccataagaaaagaaataaactaatcccagaagaagcaaaacaacagatattgaggatcctagagctatcatcacaattgaaattttactgaggc |
209 |
Q |
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| T |
45561834 |
tttctgccataagaaaagaaataaactaatcccagaagaagcaaaacaacagatattgaggatcctagagctatcatcacaattgaaattttactgaggc |
45561735 |
T |
|
| Q |
210 |
ctttgtgattaactgttatgttatcacatggttttagatatccgattttggagcaaaccaagccattggatggtgaacaattgatacatagcccaggatt |
309 |
Q |
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| T |
45561734 |
ctttgtgattaactgttttgttatcacatggttttagatatccgattttggagcaaaccaagccattggatggtgaacaactgatacatagcccaggatt |
45561635 |
T |
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| Q |
310 |
ccccaaaaatgatgacagggaagaattgagcagcttcattagtatcttcggaacaggaccctgaaaagaattgtatgacatattgatttcaaccaatgaa |
409 |
Q |
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| T |
45561634 |
ccccaaaaatgatgacagggaagaattgagcagcttcattagtatcttcggaacaggaccctgaaaagaattgtatgacatattgatttcaaccaatgaa |
45561535 |
T |
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| Q |
410 |
gggaaatcatcaagaacctg |
429 |
Q |
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| T |
45561534 |
gggaagtcatcaagaacctg |
45561515 |
T |
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