View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5481_high_6 (Length: 272)
Name: NF5481_high_6
Description: NF5481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5481_high_6 |
 | |
|
| [»] chr3 (33 HSPs) |
| |
|
| [»] scaffold0083 (2 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0002 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 33)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 9839889 - 9839630
Alignment:
| Q |
13 |
aatatataggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattt |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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|
| T |
9839889 |
aataaataggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcgtagttttcttggttatatgagaagtgacgaacattt |
9839790 |
T |
|
| Q |
113 |
tcagggatgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9839789 |
tcagggatgtcaccacattcaagcctgcaacaactttttcctgatacgaatgtagctaaatcattgacaaggtcatgcatgacaaatttttccccacgat |
9839690 |
T |
|
| Q |
213 |
catcatcgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9839689 |
catcatcgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
9839630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 9850767 - 9850508
Alignment:
| Q |
13 |
aatatataggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattt |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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|
| T |
9850767 |
aataaataggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcgtagttttcttggttatatgagaagtgacgaacattt |
9850668 |
T |
|
| Q |
113 |
tcagggatgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9850667 |
tcagggatgtcaccacattcaagcctgcaacaactttttcctgatacgaatgtagctaaatcattgacaaggtcatgcatgacaaatttttccccacgat |
9850568 |
T |
|
| Q |
213 |
catcatcgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9850567 |
catcatcgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
9850508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 10362839 - 10363098
Alignment:
| Q |
13 |
aatatataggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattt |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10362839 |
aatacataggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagtattcttggttatatgagaagtgacgaacattt |
10362938 |
T |
|
| Q |
113 |
tcagggatgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgat |
212 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10362939 |
tcaaggatgtcaccacattcaagcctgcaacaactttttcctgatacgaatgttgctaaatcattaacaaggtcatgcatgacaaatttttccccacgat |
10363038 |
T |
|
| Q |
213 |
catcatcgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10363039 |
catcattgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
10363098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 10581638 - 10581379
Alignment:
| Q |
13 |
aatatataggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattt |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
10581638 |
aatacataggaagcttcgcaaacatttacaattgtgtaatttctcaaacttcatgaaaatgtcaaagtattcttggttatatgagaagtgacgaacattt |
10581539 |
T |
|
| Q |
113 |
tcagggatgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10581538 |
tcagggatgtcaccacattcaagcctgcaacaactttttcctgatacgaatgtagctaaatcattgacaaggtcatgcatgacaaatttttccccacgat |
10581439 |
T |
|
| Q |
213 |
catcatcgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10581438 |
catcatcgcttaattgttgaattaacgatctcgataacaattcaacaaaacaatcatcac |
10581379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 10127951 - 10127697
Alignment:
| Q |
18 |
ataggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcagg |
117 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10127951 |
atagaaagcttcgcaagcatttgaaattgtataatttctcaaacttcatgaaaatgtcatagtattcttggttatatgagaagtgacgaacattttcaga |
10127852 |
T |
|
| Q |
118 |
gatgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatca |
217 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| |||||| ||||| |
|
|
| T |
10127851 |
gatgtcaccacattcaagcctgcaacaactttttcctgatacgaatgtagataaatcattgacaaggtcatgcatgacaaacttttctccacgagcatca |
10127752 |
T |
|
| Q |
218 |
tcgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10127751 |
tcgcttaattgttgaattaatgatctcgataacaattcagcaaaacaatcatcac |
10127697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 10033026 - 10032774
Alignment:
| Q |
18 |
ataggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcagg |
117 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10033026 |
atagaaagcttcgcaagcatttgaaattgtataatttctcaaacttcatgaaaatgtcatagtattcttggttatatgagaagtgacgaacattttcaga |
10032927 |
T |
|
| Q |
118 |
gatgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatca |
217 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| ||||| |||||| ||||| |
|
|
| T |
10032926 |
gatgtcaccacattcaagcctgcaacaactttttcctaatatgaatgtagctaaatcattgacaaggtcatgcatgacaaacttttctccacgagcatca |
10032827 |
T |
|
| Q |
218 |
tcgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatc |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10032826 |
tcgcttaattgttgaattaacgatctcgatagcaattcagcaaaacaatcatc |
10032774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 270
Target Start/End: Complemental strand, 10261717 - 10261469
Alignment:
| Q |
22 |
gaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcagggatg |
121 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10261717 |
gaagcttcgcaagcatttgaagttgtgtaatttctcaaacttcatgaaaatgtcatagtattcttggttatatgagaagtgacgaacattttcagtgatg |
10261618 |
T |
|
| Q |
122 |
tcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatcatcgc |
221 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||| | ||| ||||||||| |||||||||||||||||||||| ||||| |||||| ||||||||| |
|
|
| T |
10261617 |
tcaccacattcaagcctgcagcaactttttcccgatacaactgtagctaaatcactgacaaggtcatgcatgacaaacttttctccacgagcatcatcgc |
10261518 |
T |
|
| Q |
222 |
ttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatc |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10261517 |
ttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatc |
10261469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 10433090 - 10433341
Alignment:
| Q |
18 |
ataggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcagg |
117 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| | |
|
|
| T |
10433090 |
ataggaagcttcgcaggcatttgaaattgtgtaatttctcaaacttcatgaaaatgtcatggatttcttggttatatgagaagtgacgaacattttcaag |
10433189 |
T |
|
| Q |
118 |
gatgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatca |
217 |
Q |
| |
|
|||||| ||||||||||| ||| || |||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
10433190 |
gatgtccccacattcaagtctggaacaactttttcctgatacgaatgtagataaatcattgacaaggtcatgcatgacaaacttttctccacgatcatca |
10433289 |
T |
|
| Q |
218 |
tcgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcat |
269 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10433290 |
tcggttaatcgttgaattaacgatctcgataacaattcagcaaaacaatcat |
10433341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 10374891 - 10375142
Alignment:
| Q |
18 |
ataggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcagg |
117 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10374891 |
atagaaagcttcgcaagcatttgaaattgtataatttctcaaacttcatgaaaatgtcatagaatttttggttatatgagaagtgacgaacattttcagg |
10374990 |
T |
|
| Q |
118 |
gatgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatca |
217 |
Q |
| |
|
||||||| | |||||||||||| || |||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| |||| | ||||| |
|
|
| T |
10374991 |
gatgtcatcgcattcaagcctgtaacaactttttcctgatacgaatgtagataaatcattgacaaggtcatgcatgacaaacttttttccacaagcatca |
10375090 |
T |
|
| Q |
218 |
tcgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcat |
269 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
10375091 |
tcgcttaattgttgaattaatgatctcaataacaattcagcaaaacaatcat |
10375142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 10664549 - 10664295
Alignment:
| Q |
18 |
ataggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcagg |
117 |
Q |
| |
|
|||||||||||||||| || || || || | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10664549 |
ataggaagcttcgcaagcagttgaagttttttaatttctcaaacttcatgaaaatgtcatagtcttcttggttatatgagaagtgacgaacattttcagg |
10664450 |
T |
|
| Q |
118 |
gatgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatca |
217 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||| |||||||||||| ||||| ||||| ||| || ||||| |
|
|
| T |
10664449 |
catgtcaccacattcaagcctgcaacaaatttttcctgatacgaatgtagctaaatcattgataaggtcatgcatcacaaacttttcgccatgagcatca |
10664350 |
T |
|
| Q |
218 |
tcgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10664349 |
tcgcttgattgttgaattaaagatctcgataacaattcagcaaaacaatcatcac |
10664295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 11770257 - 11770003
Alignment:
| Q |
18 |
ataggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcagg |
117 |
Q |
| |
|
|||||||||||||||| ||||| || | | ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| | | |
|
|
| T |
11770257 |
ataggaagcttcgcaagcatttgaagctatataatttctcaaacttgatgaaaatgtcatagtattcttggttatatgagaagtgacgaacatttttatg |
11770158 |
T |
|
| Q |
118 |
gatgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatca |
217 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||| |||||||||||||| ||||| ||||| |||||| ||||| |
|
|
| T |
11770157 |
gatgtcaccacattcaagcctgcaacaactttttcctgatatgaatgtagctaaatcatttacaaggtcatgcataacaaacttttctccacgagcatca |
11770058 |
T |
|
| Q |
218 |
tcgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11770057 |
tcacttaattgttgaattaacgatctcgataacaattcagcaaaccaatcatcac |
11770003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 11781028 - 11781282
Alignment:
| Q |
18 |
ataggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcagg |
117 |
Q |
| |
|
|||||||||||||||| ||||| || ||| ||||||||||||||| ||||||||||||| | |||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
11781028 |
ataggaagcttcgcaagcatttgaagctgtataatttctcaaacttaatgaaaatgtcatggtattcttggttatatgagaagtgtcgaacatttttagg |
11781127 |
T |
|
| Q |
118 |
gatgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatca |
217 |
Q |
| |
|
|||||||||||||||||| || ||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| || || || || ||||| |
|
|
| T |
11781128 |
gatgtcaccacattcaagtctacaacaactttttgctgatacgaatgtagctaaatcattgacaaggtcatgcatgacaaacttctcttcatgagcatca |
11781227 |
T |
|
| Q |
218 |
tcgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11781228 |
ttgcttaattgttgaattaacgatcttgataacaattcagcaaaacaatcatcac |
11781282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 27 - 272
Target Start/End: Complemental strand, 10518499 - 10518254
Alignment:
| Q |
27 |
ttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcagggatgtcacc |
126 |
Q |
| |
|
||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10518499 |
ttcgcaagcatttgaaattgtataatttctcaaacttcatgaaaatgtcatagtattcttggttatatgagaagtgacgaaccttttcagggatgtcacc |
10518400 |
T |
|
| Q |
127 |
acattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatcatcgcttaat |
226 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||| |||||||| | ||||||||||||||||||| | |||| || || |||||| ||||||| |
|
|
| T |
10518399 |
acattcaagcctgcaacaactttttcctgagacgaatgtagctaaatcgtggacaaggtcatgcatgacacactttttttcatgagcatcattgcttaat |
10518300 |
T |
|
| Q |
227 |
tgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
10518299 |
tgttgaattaatgatcttgataataattcagcaaaacaatcatcac |
10518254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 10089818 - 10089559
Alignment:
| Q |
13 |
aatatataggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattt |
112 |
Q |
| |
|
|||| |||||||||||||||| ||| || ||| ||||||| |||||||||||||||||||||| | |||||| |||||||| | |||||||| ||| |
|
|
| T |
10089818 |
aatagataggaagcttcgcaagactttgaagttgaataatttcgcaaacttcatgaaaatgtcatacagttcttgattatatgaaacatgacgaaccttt |
10089719 |
T |
|
| Q |
113 |
tcagggatgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgat |
212 |
Q |
| |
|
|||||||||||||||||| |||| ||| || |||||| ||| |||| || ||| || ||||| ||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
10089718 |
tcagggatgtcaccacatccaagtctgaaacaactttgtccagatatgactgtagccaaatcgttgacaaggtcatgcatgacaaacttttctccacgag |
10089619 |
T |
|
| Q |
213 |
catcatcgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10089618 |
catcattgcttaattgttgaattaacgatctcgataacaattcagcaaagcaatcatcac |
10089559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 10196701 - 10196442
Alignment:
| Q |
13 |
aatatataggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattt |
112 |
Q |
| |
|
|||| |||||||||||||||| ||| || ||| ||||||| |||||||||||||||||||||| | |||||| |||||||| | |||||||| ||| |
|
|
| T |
10196701 |
aatagataggaagcttcgcaagactttgaagttgaataatttcgcaaacttcatgaaaatgtcatacagttcttgattatatgaaacatgacgaaccttt |
10196602 |
T |
|
| Q |
113 |
tcagggatgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgat |
212 |
Q |
| |
|
|||||||||||||||||| |||| ||| || |||||| ||| |||| || ||| || ||||| ||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
10196601 |
tcagggatgtcaccacatccaagtctgaaacaactttgtccagatatgactgtagccaaatcgttgacaaggtcatgcatgacaaacttttctccacgag |
10196502 |
T |
|
| Q |
213 |
catcatcgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10196501 |
catcattgcttaattgttgaattaacgatctcgataacaattcagcaaagcaatcatcac |
10196442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 10501596 - 10501343
Alignment:
| Q |
19 |
taggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcaggg |
118 |
Q |
| |
|
||||||||||||||| ||||| ||||||| || |||| |||||||||||| ||||||| | |||||||||||| || || || | ||||| || |
|
|
| T |
10501596 |
taggaagcttcgcaagcatttgaaattgtagaaattcttcaacttcatgaaattgtcatactccttttggttatatgacaaatggcggatatttttagaa |
10501497 |
T |
|
| Q |
119 |
atgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatcat |
218 |
Q |
| |
|
|||| ||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||| | ||||| |||| | |||||| |
|
|
| T |
10501496 |
atgttaccacattcaaacctgcaacaactttttcctgatatgaatgttgctaaatcattaacaaggtcatgcatgacatacttttctccacaagcatcat |
10501397 |
T |
|
| Q |
219 |
cgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
| || ||||||||||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
10501396 |
catttgattgttgaattaacgatctagataacaattcgacaaaataatcatcac |
10501343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 13853727 - 13853980
Alignment:
| Q |
19 |
taggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcaggg |
118 |
Q |
| |
|
||||||||||||||| ||||| ||||||| | |||||||||||| ||||||||||||| | |||||||||||||||||| ||||||||| ||| | | |
|
|
| T |
13853727 |
taggaagcttcgcaagcatttgaaattgtagattttctcaaactttctgaaaatgtcatacacttcttggttatatgagaaatgacgaacagttttggag |
13853826 |
T |
|
| Q |
119 |
atgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatcat |
218 |
Q |
| |
|
||||||||| ||||| ||||||| |||||||||||||||||| ||| ||||| || ||||||||||||||||||| ||| ||| ||| | |||||| |
|
|
| T |
13853827 |
atgtcaccaaattcacacctgcaacaactttttcctgatacgactgtagctaagtcgttgacaaggtcatgcatgaaaaagatttttccaaaaccatcat |
13853926 |
T |
|
| Q |
219 |
cgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
| || ||||||||||||| ||||| ||| |||||||| ||| |||||||||| |
|
|
| T |
13853927 |
catttgattgttgaattaaggatctggatgacaattcaagaaagcaatcatcac |
13853980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 101 - 268
Target Start/End: Complemental strand, 10078209 - 10078042
Alignment:
| Q |
101 |
tgacgaacattttcagggatgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatt |
200 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| ||||||| |||||||||| ||||||| ||| || ||||||||||||||||||||||||| ||| | |
|
|
| T |
10078209 |
tgacgaacattttcagagatatcaccacattcaaacctgcaacaactttttccagatacgactgtagccaaatcattgacaaggtcatgcatgaaaaact |
10078110 |
T |
|
| Q |
201 |
tttccccacgatcatcatcgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatca |
268 |
Q |
| |
|
|||| |||||| ||| ||| || ||||||||||||| ||||| || || ||||||||||| |||||| |
|
|
| T |
10078109 |
tttctccacgaccattatcatttgattgttgaattaaggatctggacaataattcagcaaagcaatca |
10078042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 101 - 272
Target Start/End: Complemental strand, 10185182 - 10185011
Alignment:
| Q |
101 |
tgacgaacattttcagggatgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatt |
200 |
Q |
| |
|
|||||||||||||||| ||| | ||||||||||| ||||||| |||||||||| ||||||| ||| || ||||||||||||||||||||||||| ||| | |
|
|
| T |
10185182 |
tgacgaacattttcagagatattaccacattcaaacctgcaacaactttttccagatacgactgtagccaaatcattgacaaggtcatgcatgaaaaact |
10185083 |
T |
|
| Q |
201 |
tttccccacgatcatcatcgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
|||| |||||| ||| ||| || ||||||||||||| ||||| || || ||||||||||| |||||||||| |
|
|
| T |
10185082 |
tttctccacgaccattatcatttgattgttgaattaaggatctggacaataattcagcaaagcaatcatcac |
10185011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 272
Target Start/End: Complemental strand, 10528377 - 10528127
Alignment:
| Q |
22 |
gaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcagggatg |
121 |
Q |
| |
|
|||||||| ||| ||||||||||||| || | | ||||||||||||||||||||| | ||||||| ||||||| || || | ||||||| || || |
|
|
| T |
10528377 |
gaagcttcacaagcatttaaaattgttgaaacttttaaacttcatgaaaatgtcatacacttcttgggtatatgacaaatggaggacatttttagagaca |
10528278 |
T |
|
| Q |
122 |
tcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatcatcgc |
221 |
Q |
| |
|
| |||||||||||||||| || |||||||||| ||||||| ||| |||||||| ||||||||||||||||||| ||| |||| |||||| || ||| |
|
|
| T |
10528277 |
ttaccacattcaagcctgtaacaactttttccagatacgattgtagctaaatcgttgacaaggtcatgcatgaaaaacttttttccacgaccaacatgat |
10528178 |
T |
|
| Q |
222 |
ttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
|| |||| |||||||| ||||| || |||||||||||||| || ||||||| |
|
|
| T |
10528177 |
ttgattgctgaattaaggatctggacaacaattcagcaaagcagtcatcac |
10528127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 272
Target Start/End: Complemental strand, 10672701 - 10672451
Alignment:
| Q |
22 |
gaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcagggatg |
121 |
Q |
| |
|
|||||||| ||| ||||||||||||| || | | ||||||||||||||||||||| | ||||||| ||||||| || || | ||||||| || || |
|
|
| T |
10672701 |
gaagcttcacaagcatttaaaattgttgaaacttttaaacttcatgaaaatgtcatacacttcttgggtatatgacaaatggaggacatttttagagaca |
10672602 |
T |
|
| Q |
122 |
tcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatcatcgc |
221 |
Q |
| |
|
| |||||||||||||||| || |||||||||| ||||||| ||| | |||||| |||| ||||||||| |||| ||| |||| |||||| || |||| |
|
|
| T |
10672601 |
ttaccacattcaagcctggaacaactttttccagatacgactgtagttaaatcgttgataaggtcatgtatgaaaaacttttttccacgaccaacatcat |
10672502 |
T |
|
| Q |
222 |
ttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
|| |||| |||||||| ||||| || |||||||||||||| || ||||||| |
|
|
| T |
10672501 |
ttgattgctgaattaaggatctggacaacaattcagcaaagcagtcatcac |
10672451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 256
Target Start/End: Complemental strand, 13290650 - 13290450
Alignment:
| Q |
56 |
tcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcagggatgt---caccacattcaagcctgcaagaactttttc |
152 |
Q |
| |
|
||||||||| ||| || |||||| | | |||| |||||||| || ||||||||||||| || |||| ||||||||||||||||| | ||||| ||| |
|
|
| T |
13290650 |
tcaaacttcttgagaaagtcatacactccttgattatatgaaaaatgacgaacatttttagacatgttaccaccacattcaagcctgaagcaacttgttc |
13290551 |
T |
|
| Q |
153 |
ctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatcatcgcttaattgttgaattaacgatctcgataacaa |
252 |
Q |
| |
|
|||| || | | |||||||||||||||||||| ||||| ||||||||||| | |||||||| || ||||||||||||| || || |||||||| |
|
|
| T |
13290550 |
ctgacaccactaaggctaaatcattgacaaggtcgtgcataacaaatttttcttttccatcatcat---ttgattgttgaattaaggacctggataacaa |
13290454 |
T |
|
| Q |
253 |
ttca |
256 |
Q |
| |
|
|||| |
|
|
| T |
13290453 |
ttca |
13290450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 199
Target Start/End: Complemental strand, 10890268 - 10890148
Alignment:
| Q |
82 |
ttcttggttatatgagaagtgacgaacattttcagggatgtcaccac---attcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattg |
178 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||| ||| |||||||| |||||| ||| || || ||||||| ||||||| ||| ||||||||||| |
|
|
| T |
10890268 |
ttcttgattatatgagcaatgacgaacatttttgggggcgtcaccaccaaattcaaccctataacaagtttttccagatacgattgtagctaaatcatta |
10890169 |
T |
|
| Q |
179 |
acaaggtcatgcatgacaaat |
199 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10890168 |
acaaggtcatgcatgacaaat |
10890148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 204
Target Start/End: Complemental strand, 13172017 - 13171865
Alignment:
| Q |
55 |
ctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcagggatgt---caccacattcaagcctgcaagaacttttt |
151 |
Q |
| |
|
|||||||||| |||||| ||| || || |||| |||||||| || ||||| ||||||| || |||| ||||||||||||||||| | ||||| || |
|
|
| T |
13172017 |
ctcaaacttcttgaaaaagtcgtaatatccttgattatatgacaaatgacgtacatttttagacatgttaccaccacattcaagcctgaagcaacttgtt |
13171918 |
T |
|
| Q |
152 |
cctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttc |
204 |
Q |
| |
|
||||| || | | |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13171917 |
cctgacaccactaaggctaaatcattgacaaggtcatgcataacaaatttttc |
13171865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 272
Target Start/End: Complemental strand, 8862180 - 8862055
Alignment:
| Q |
147 |
tttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatcatcgcttaattgttgaattaacgatctcga |
246 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||| |||||||||||||||||||| |||| | | | | || | || |||||||||||| ||||| || |
|
|
| T |
8862180 |
tttttccagatacgattgtagctaaatcattaacaaggtcatgcatgacaaacttttgttctctagtaccaacatgtagttgttgaattaatgatctgga |
8862081 |
T |
|
| Q |
247 |
taacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
8862080 |
taacagttcagcaaaacaatcatcac |
8862055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 256
Target Start/End: Complemental strand, 13345075 - 13344874
Alignment:
| Q |
55 |
ctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcagggatgt---caccacattcaagcctgcaagaacttttt |
151 |
Q |
| |
|
|||||||||| |||||| ||| || | |||| |||||||| || ||||||||||||| || |||| ||||||||||||||||| | ||||| || |
|
|
| T |
13345075 |
ctcaaacttcttgaaaaagtcgtaatttccttgattatatgacaaatgacgaacatttttagacatgttaccaccacattcaagcctgaagcaacttgtt |
13344976 |
T |
|
| Q |
152 |
cctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatcatcgcttaattgttgaattaacgatctcgataaca |
251 |
Q |
| |
|
||||| || | | |||||||||||||||||||| ||||| ||||||||||| | |||||||| || ||||||||||||| || || ||||||| |
|
|
| T |
13344975 |
cctgacaccactaacgctaaatcattgacaaggtcgtgcataacaaatttttcttttccatcatcat---ttgattgttgaattaaggacctggataaca |
13344879 |
T |
|
| Q |
252 |
attca |
256 |
Q |
| |
|
||||| |
|
|
| T |
13344878 |
attca |
13344874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 11245793 - 11245848
Alignment:
| Q |
144 |
aactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaat |
199 |
Q |
| |
|
|||||||||||||||||| | | ||||||||||| ||||||||||||||||||||| |
|
|
| T |
11245793 |
aactttttcctgatacgactatagctaaatcattaacaaggtcatgcatgacaaat |
11245848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 11159271 - 11159317
Alignment:
| Q |
226 |
ttgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
11159271 |
ttgttgaattaatgatctggataacaattcagcaaaacaatcatcac |
11159317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 272
Target Start/End: Original strand, 11148005 - 11148154
Alignment:
| Q |
123 |
caccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatcatcgct |
222 |
Q |
| |
|
||||| |||||| |||| || |||||||||| ||||||| ||| ||||| ||||| |||| || ||||||||||| |||| || | | |||| | |
|
|
| T |
11148005 |
caccaaattcaaccctgtaacaactttttccagatacgagtgtagctaactcattaacaaaatcgtgcatgacaaacctttctcctctagtatcaacatg |
11148104 |
T |
|
| Q |
223 |
taattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
|| ||||||||||| ||||| ||||||| |||||||||||||||||||| |
|
|
| T |
11148105 |
tagctgttgaattaatgatctggataacagttcagcaaaacaatcatcac |
11148154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 256
Target Start/End: Complemental strand, 13161966 - 13161765
Alignment:
| Q |
55 |
ctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcagggatgtcaccac---attcaagcctgcaagaacttttt |
151 |
Q |
| |
|
|||||||||| |||||| ||| || | |||| |||||||| || ||||||||||||| || |||| ||||| ||||||||||| | ||||| || |
|
|
| T |
13161966 |
ctcaaacttcttgaaaaagtcgtaatctccttgattatatgaaaaatgacgaacatttttagacatgttaccaccaaattcaagcctgaagcaacttgtt |
13161867 |
T |
|
| Q |
152 |
cctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatcatcgcttaattgttgaattaacgatctcgataaca |
251 |
Q |
| |
|
||||| || | | |||||||||||||||||||| ||||| ||||||||||| | |||||||| || ||||||||||||| || || ||||||| |
|
|
| T |
13161866 |
cctgacaccactaaggctaaatcattgacaaggtcgtgcataacaaatttttcttttccatcatcat---ttgattgttgaattaaggacctggataaca |
13161770 |
T |
|
| Q |
252 |
attca |
256 |
Q |
| |
|
||||| |
|
|
| T |
13161769 |
attca |
13161765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 256
Target Start/End: Complemental strand, 13333890 - 13333689
Alignment:
| Q |
55 |
ctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcagggatgtcaccac---attcaagcctgcaagaacttttt |
151 |
Q |
| |
|
|||||||||| |||||| ||| || | |||| |||||||| || ||||||||||||| || |||| ||||| ||||||||||| | ||||| || |
|
|
| T |
13333890 |
ctcaaacttcttgaaaaagtcgtaatctccttgattatatgaaaaatgacgaacatttttagacatgttaccaccaaattcaagcctgaagcaacttgtt |
13333791 |
T |
|
| Q |
152 |
cctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatcatcgcttaattgttgaattaacgatctcgataaca |
251 |
Q |
| |
|
||||| || | | |||||||||||||||||||| ||||| ||||||||||| | |||||||| || ||||||||||||| || || ||||||| |
|
|
| T |
13333790 |
cctgacaccactaaggctaaatcattgacaaggtcgtgcataacaaatttttcttttccatcatcat---ttgattgttgaattaaggacctggataaca |
13333694 |
T |
|
| Q |
252 |
attca |
256 |
Q |
| |
|
||||| |
|
|
| T |
13333693 |
attca |
13333689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 11159200 - 11159248
Alignment:
| Q |
155 |
gatacgaatgttgctaaatcattgacaaggtcatgcatgacaaattttt |
203 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
11159200 |
gatacgattgtagctaaatcattaacaaggtcatgcatgacaaactttt |
11159248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 6916727 - 6916760
Alignment:
| Q |
165 |
ttgctaaatcattgacaaggtcatgcatgacaaa |
198 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
6916727 |
ttgctaaatcattgacaagatcatgcatgacaaa |
6916760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 56643 - 56902
Alignment:
| Q |
13 |
aatatataggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattt |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
56643 |
aatacataggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagtactcttggttatatgagaagtgacgaacattt |
56742 |
T |
|
| Q |
113 |
tcagggatgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgat |
212 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
56743 |
tcaaggatgtcaccacattcaagcctgcaacaactttttcctgatacgaatgtagctaaatcattgataaggtcatgcatgacaaatttttccccacgat |
56842 |
T |
|
| Q |
213 |
catcatcgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56843 |
catcatcgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
56902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 57452 - 57711
Alignment:
| Q |
13 |
aatatataggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattt |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
57452 |
aatacataggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagtactcttggttatatgagaagtgacgaacattt |
57551 |
T |
|
| Q |
113 |
tcagggatgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgat |
212 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
57552 |
tcaaggatgtcaccacattcaagcctgcaacaactttttcctgatacgaatgtagctaaatcattgaaaaggtcatgcatgacaaatttttccccacgat |
57651 |
T |
|
| Q |
213 |
catcatcgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
57652 |
catcatcgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
57711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 11486060 - 11485809
Alignment:
| Q |
19 |
taggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcaggg |
118 |
Q |
| |
|
||||||||||||||| ||||| ||||||| || |||| ||||||||||||||||||| | |||||| |||||||| || ||||||| ||||| || | |
|
|
| T |
11486060 |
taggaagcttcgcaagcatttgaaattgtagaaattcttaaacttcatgaaaatgtcacgcacttcttgattatatgacaaatgacgaatatttttagag |
11485961 |
T |
|
| Q |
119 |
atgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatcat |
218 |
Q |
| |
|
|||| |||||||||||| |||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| ||| || |||||| |
|
|
| T |
11485960 |
atgttaccacattcaagtctgcaacaactttttcctgatatgaatgtagctaaatcattgacaaggtcatgcatgacaaacttttctccatgagcatcat |
11485861 |
T |
|
| Q |
219 |
cgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatc |
270 |
Q |
| |
|
| || ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11485860 |
catttgattgttgaattaacgatctagataacaattcagcaaaacaatcatc |
11485809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 22 - 269
Target Start/End: Original strand, 44956739 - 44956986
Alignment:
| Q |
22 |
gaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcagggatg |
121 |
Q |
| |
|
|||||||||||| |||| ||||||| || |||| ||||||||||||||||||||| ||||||||||||||| || || ||||||||||||| |||| |
|
|
| T |
44956739 |
gaagcttcgcaaggatttgaaattgtagaaattcttaaacttcatgaaaatgtcatactcttcttggttatatgacaaatggcgaacattttcagagatg |
44956838 |
T |
|
| Q |
122 |
tcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatcatcgc |
221 |
Q |
| |
|
| ||||||||||||||| || ||| ||||||||||| |||||| |||||||| ||||||||||||||||||||||| ||||| ||| || |||||| | |
|
|
| T |
44956839 |
tgaccacattcaagcctagaacaacattttcctgatatgaatgtagctaaatcgttgacaaggtcatgcatgacaaacttttctccatgagtatcatcac |
44956938 |
T |
|
| Q |
222 |
ttaattgttgaattaacgatctcgataacaattcagcaaaacaatcat |
269 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
44956939 |
ttaattgttgaattaaggatctagataacaattcagcaaaacaatcat |
44956986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 26907916 - 26907666
Alignment:
| Q |
19 |
taggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcaggg |
118 |
Q |
| |
|
||||||||||||||| ||||| ||| ||| || || ||||||| ||||| |||||| |||||| |||||||| | |||||||| ||||||| |
|
|
| T |
26907916 |
taggaagcttcgcaagcatttgaaactgtagaaaggcttaaacttcgtgaaatggtcatactcttcttgattatatgaaacatgacgaaccttttcag-- |
26907819 |
T |
|
| Q |
119 |
atgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatcat |
218 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
26907818 |
-tgtcaccacattcaaacctgcaacaactttttccagatacgattgtagctaaatcattgacaaggtcatgcatgacaaacttttccccacgagcatcat |
26907720 |
T |
|
| Q |
219 |
cgcttaattgttgaattaacgatctcgataacaattcagcaaaacaatcatcac |
272 |
Q |
| |
|
| || ||||||||||||| ||||| |||| |||||||||||| ||||||||| |
|
|
| T |
26907719 |
catttgattgttgaattaaggatctggatagcaattcagcaaagaaatcatcac |
26907666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 17851971 - 17852215
Alignment:
| Q |
20 |
aggaagcttcgcaaacatttaaaattgtgtaatttctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcaggga |
119 |
Q |
| |
|
||||||||||||| | ||| ||||||| ||| |||| |||||||||||| || ||||| | |||| || ||||| || ||||| | |||||||| || |
|
|
| T |
17851971 |
aggaagcttcgcaggcgtttgaaattgtataaattcttaaacttcatgaagatatcatactctccttgattgtatgacaaatgacggatattttcagaga |
17852070 |
T |
|
| Q |
120 |
tgtcaccacattcaagcctgcaagaactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatcatc |
219 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| ||||||| ||| ||||| || | ||||||| | ||||||| ||| |||| | || || |||||| |
|
|
| T |
17852071 |
tgtcaccacattcaaacctgcaacaactttttccagatacgactgtagctaagtcgtagacaaggccgtgcatgaaaaactttttctcatgagaatcatc |
17852170 |
T |
|
| Q |
220 |
gcttaattgttgaattaacgatctcgataacaattcagcaaaaca |
264 |
Q |
| |
|
|| |||||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
17852171 |
atttgtttgttgaattaaggatctggataacaattcagaaaaaca |
17852215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 56 - 261
Target Start/End: Original strand, 31678814 - 31679022
Alignment:
| Q |
56 |
tcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcagggatgt---caccacattcaagcctgcaagaactttttc |
152 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||| || || || |||||||||| ||||| ||||| |||| |||||||| ||||||||| |
|
|
| T |
31678814 |
tcaaacttcttgaaaatgtcatactcttcttggttatatgaaaaatggcggacattttcagagatgttgccaccatgttcacgcctgcaacaactttttc |
31678913 |
T |
|
| Q |
153 |
ctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatcatcgcttaattgttgaattaacgatctcgataacaa |
252 |
Q |
| |
|
| ||||| | ||| ||||||||||||||||| |||||||||| ||| || | | | | ||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
31678914 |
cagatacaattgtagctaaatcattgacaagatcatgcatgagaaacttctgtcttccaaaatcatcgtgcgattgttgaattaacgatctagataacaa |
31679013 |
T |
|
| Q |
253 |
ttcagcaaa |
261 |
Q |
| |
|
|||| |||| |
|
|
| T |
31679014 |
ttcaacaaa |
31679022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 204
Target Start/End: Original strand, 134971 - 135123
Alignment:
| Q |
55 |
ctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcagggatgt---caccacattcaagcctgcaagaacttttt |
151 |
Q |
| |
|
|||||||||| |||||| ||| || || |||| |||||||| || ||||| ||||||| || |||| ||||||||||||||||| | ||||| || |
|
|
| T |
134971 |
ctcaaacttcttgaaaaagtcgtaatatccttgattatatgacaaatgacgtacatttttagacatgttaccaccacattcaagcctgaagcaacttgtt |
135070 |
T |
|
| Q |
152 |
cctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttc |
204 |
Q |
| |
|
||||| || | | |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
135071 |
cctgacaccactaaggctaaatcattgacaaggtcatgcataacaaatttttc |
135123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 256
Target Start/End: Original strand, 145022 - 145223
Alignment:
| Q |
55 |
ctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcagggatgtcaccac---attcaagcctgcaagaacttttt |
151 |
Q |
| |
|
|||||||||| |||||| ||| || | |||| |||||||| || ||||||||||||| || |||| ||||| ||||||||||| | ||||| || |
|
|
| T |
145022 |
ctcaaacttcttgaaaaagtcgtaatctccttgattatatgaaaaatgacgaacatttttagacatgttaccaccaaattcaagcctgaagcaacttgtt |
145121 |
T |
|
| Q |
152 |
cctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatcatcgcttaattgttgaattaacgatctcgataaca |
251 |
Q |
| |
|
||||| || | | |||||||||||||||||||| ||||| ||||||||||| | |||||||| || ||||||||||||| || || ||||||| |
|
|
| T |
145122 |
cctgacaccactaaggctaaatcattgacaaggtcgtgcataacaaatttttcttttccatcatcat---ttgattgttgaattaaggacctggataaca |
145218 |
T |
|
| Q |
252 |
attca |
256 |
Q |
| |
|
||||| |
|
|
| T |
145219 |
attca |
145223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 256
Target Start/End: Original strand, 153327 - 153528
Alignment:
| Q |
55 |
ctcaaacttcatgaaaatgtcatagaattcttggttatatgagaagtgacgaacattttcagggatgtcaccac---attcaagcctgcaagaacttttt |
151 |
Q |
| |
|
|||||||||| |||||| ||| || | |||| |||||||| || ||||||||||||| || |||| ||||| ||||||||||| | ||||| || |
|
|
| T |
153327 |
ctcaaacttcttgaaaaagtcgtaatctccttgattatatgaaaaatgacgaacatttttagacatgttaccaccaaattcaagcctgaagcaacttgtt |
153426 |
T |
|
| Q |
152 |
cctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatcatcgcttaattgttgaattaacgatctcgataaca |
251 |
Q |
| |
|
||||| || | | |||||||||||||||||||| ||||| ||||||||||| | |||||||| || ||||||||||||| || || ||||||| |
|
|
| T |
153427 |
cctgacaccactaaggctaaatcattgacaaggtcgtgcataacaaatttttcttttccatcatcat---ttgattgttgaattaaggacctggataaca |
153523 |
T |
|
| Q |
252 |
attca |
256 |
Q |
| |
|
||||| |
|
|
| T |
153524 |
attca |
153528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 261
Target Start/End: Complemental strand, 29837537 - 29837420
Alignment:
| Q |
144 |
aactttttcctgatacgaatgttgctaaatcattgacaaggtcatgcatgacaaatttttccccacgatcatcatcgcttaattgttgaattaacgatct |
243 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||| ||| | |||||||||||||||||||||| ||| | |||||| | |||||||||||| ||||| |
|
|
| T |
29837537 |
aacttgttcctgatacgaatgccgctaagtcactgatacggtcatgcatgacaaatttttctccatcagtatcatcatatgcttgttgaattaaggatct |
29837438 |
T |
|
| Q |
244 |
cgataacaattcagcaaa |
261 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
29837437 |
agatatcaattcagcaaa |
29837420 |
T |
|
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