View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5481_high_7 (Length: 254)
Name: NF5481_high_7
Description: NF5481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5481_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 17517494 - 17517250
Alignment:
| Q |
1 |
caaattatgctcaaacaatgaagtaatgaataaagtactgtta-gaacacatgaatgatgaatgtgattataataagtagaacatagtgcaaaatataaa |
99 |
Q |
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||||| ||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
17517494 |
caaatgatgctcaaacaataaagtgatgaataaagtactgttaagaacacatgaatgatgaatgtgattataataagtaaaacataatgcaaaatataaa |
17517395 |
T |
|
| Q |
100 |
ggaaccacaatgttctcaccttattttgttcaagagtacactctttgaaaacaagacactcacactcctatcctatcctatataatgtatgaaaatatat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||| |
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| T |
17517394 |
ggaaccacaatgttctcaccttattttgttcaagagtgcactctttgaaaacaagacactcacactcctatcctat-atatagaatgtatgaaaatgtat |
17517296 |
T |
|
| Q |
200 |
tacaacttgtgcttaaatctattggattcatataaaccatattctt |
245 |
Q |
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| T |
17517295 |
tgcaacttgtgcttaaatctattggattcatataaaccattttctt |
17517250 |
T |
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