View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5481_low_12 (Length: 231)
Name: NF5481_low_12
Description: NF5481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5481_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 12014343 - 12014116
Alignment:
| Q |
5 |
tgagagtgcacacaaagtcgtcccttctaatgtttttggcagtttgattagaaagagagacgagaatgaaaataatggagaagtggatggtgatgcaaaa |
104 |
Q |
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| T |
12014343 |
tgagattgcacacaaagtcgtcccttctactgtttttggcagtttgattagaaagagagacgagaatgaaaataatggagaagtggatggtgatgcaaaa |
12014244 |
T |
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| Q |
105 |
gacaaggataatgaaaatcggtttggtgccctcgagagaattaagaac-----------ctaaatgttaggtgagaggattcaagttttatattttgata |
193 |
Q |
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| T |
12014243 |
gacaaggataatgaaaatcggtttggtgccctc--aagaattaagaacctgaaacggaactaaatgttaggtgagaggattcaagttttatattttgata |
12014146 |
T |
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| Q |
194 |
gcatgaaattgattttgatgattatgatga |
223 |
Q |
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| T |
12014145 |
gcatgaaattgattttgatgattatgatga |
12014116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 28 - 151
Target Start/End: Complemental strand, 11993359 - 11993235
Alignment:
| Q |
28 |
cttctaatgtttttggca-gtttgattagaaagagagacgagaatgaaaataatggagaagtggatggtgatgcaaaagacaaggataatgaaaatcggt |
126 |
Q |
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| T |
11993359 |
cttctactgtttttggaaagtctgattagaaagagagacgattatgaaaataatggagaagtagatggtgatgccaaagaaaaggataatgaagatcgat |
11993260 |
T |
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| Q |
127 |
ttggtgccctcgagagaattaagaa |
151 |
Q |
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| T |
11993259 |
ttggtgccctcgagagaattaagaa |
11993235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 3032038 - 3032257
Alignment:
| Q |
5 |
tgagagtgcacacaaagtcgtcccttctaatgtttttggcagtttgattagaaagagagacgagaatgaaaataatggagaagtggatggtgatgcaaaa |
104 |
Q |
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| T |
3032038 |
tgagattgcacaaaaagatgtcccttctgctgtttttggcggtttggttagaaaaagagatgagattgaaaataatg---aagtagatgatggtgcaaaa |
3032134 |
T |
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| Q |
105 |
gacaaggataatgaaaatcggtttggtgccctcgagagaattaagaacc-----------taaatgttaggtgagaggattcaagttttatattttgata |
193 |
Q |
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|| ||||||||||||| |||| |||||||||| |||||||||||||| | |||||||| ||| |||| |||| |||| | |||||||| |
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| T |
3032135 |
gagaaggataatgaaagtcggcttggtgcccttgagagaattaagaagctgaaacgaaattaaatgttgggttagagtattccagttaaaagttttgata |
3032234 |
T |
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| Q |
194 |
gcatgaaattgattttgatgatt |
216 |
Q |
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| T |
3032235 |
gcatgaaattgattttgatgatt |
3032257 |
T |
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