View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5481_low_2 (Length: 581)
Name: NF5481_low_2
Description: NF5481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5481_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-147; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 256 - 573
Target Start/End: Complemental strand, 926560 - 926236
Alignment:
| Q |
256 |
atggatgtgagcttcataggtttggatcccatttaatgcatattcaagtcaaccaaggtaggcagagacatgaagcaaccttgaaatccattacttcact |
355 |
Q |
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| T |
926560 |
atggatgtgagcttcataggtttggatcccatttaatgcatattcaagtcaaccaaggtaggcagagacatgaagcagccttgaaatccattacttcact |
926461 |
T |
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| Q |
356 |
ttcttgcttgatcccaacttcgacctttcttccgtgcaacttccnnnnnnncatctccatgac----tttataaatagcctaaaaataaacacttgttga |
451 |
Q |
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| T |
926460 |
ttcttgcttgatcccaacttcgacctttcttccgtgcaacttcctttttttcatctccatgactttatttataaatagcctaaaaataaacacttgttga |
926361 |
T |
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| Q |
452 |
atgcatccaaataaactcataaaagaaacacaagttatggaagaaacttttatttcctccaaaccatgtgcca---aagaagagatcatcgatttgaacc |
548 |
Q |
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| T |
926360 |
atgcatccaaataaactcataaaagaaacacaagttatggaagaaacttttatttcctccaaaccatgtgccaaagaagaagagatcatcgatttgaacc |
926261 |
T |
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| Q |
549 |
aaatcacactccgatcctttcatct |
573 |
Q |
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| T |
926260 |
aaatcacactccgatcctttaatct |
926236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 927250 - 927018
Alignment:
| Q |
19 |
tataaggtgcatcctaggaagatcaaagctatataaaattgtggtagattagtgaagatgtaaatgatatacataaaaatggtgttgaaattatcaaatt |
118 |
Q |
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| T |
927250 |
tataaggtgcatcctaggaagatcaaaggtatataaaattgtggtagattagtgaagatgtaaatgatatacataaaaatggtgttgaaattatcaaatt |
927151 |
T |
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| Q |
119 |
attagacactagtagcttagctatagattagagaccaccgtaattgatgcagtgatgcctatccatcctgtttctgctctttagaaacccatcccacaag |
218 |
Q |
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| T |
927150 |
attagacactagtagcttagctatagattagagaccaccgtaattgatgcagtgatgcctatccatcctgtttctgctctttagaaacccatcccacaag |
927051 |
T |
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| Q |
219 |
ccatctcttgaatcacaaaacaactaaaatcac |
251 |
Q |
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| T |
927050 |
ccatctcttgaatcacaaaacaactaaaatcac |
927018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 488 - 573
Target Start/End: Complemental strand, 928641 - 928556
Alignment:
| Q |
488 |
atggaagaaacttttatttcctccaaaccatgtgccaaagaagagatcatcgatttgaaccaaatcacactccgatcctttcatct |
573 |
Q |
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| T |
928641 |
atggaggaaacttttatttcttcaaaaccatgtggcaaagaagaaatcattgatttgaaccaaatcacactccgatcctttaatct |
928556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 268 - 350
Target Start/End: Complemental strand, 924555 - 924473
Alignment:
| Q |
268 |
ttcataggtttggatcccatttaatgcatattcaagtcaaccaaggtaggcagagacatgaagcaaccttgaaatccattact |
350 |
Q |
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| T |
924555 |
ttcataggcttggatccattttaatgcatattcaagtcaaccatggcaggcagagacataaagcagccttgaaatcccttact |
924473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 485 - 573
Target Start/End: Complemental strand, 939569 - 939481
Alignment:
| Q |
485 |
gttatggaagaaacttttatttcctccaaaccatgtgccaaagaagagatcatcgatttgaaccaaatcacactccgatcctttcatct |
573 |
Q |
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| T |
939569 |
gttatggaggaaacttttatttcttccaaaccaagtggcaatgaacaaagcattgatttgaaccaaatcacactccgaccttttcatct |
939481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 522 - 573
Target Start/End: Complemental strand, 935740 - 935689
Alignment:
| Q |
522 |
ccaaagaagagatcatcgatttgaaccaaatcacactccgatcctttcatct |
573 |
Q |
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| T |
935740 |
ccaaagaagagatcattgatttgaaccaaatcacactccgatcttttaatct |
935689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 562
Target Start/End: Complemental strand, 924278 - 924212
Alignment:
| Q |
496 |
aacttttatttcctccaaaccatgtgccaaagaagagatcatcgatttgaaccaaatcacactccga |
562 |
Q |
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| T |
924278 |
aacttctatttcttccaaaccaggtgccaaagaagagagaattgatctaacccaaatcacactccga |
924212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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