View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5481_low_3 (Length: 450)
Name: NF5481_low_3
Description: NF5481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5481_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 230 - 432
Target Start/End: Complemental strand, 10459557 - 10459353
Alignment:
| Q |
230 |
gtaacacatttatagaggagaatttgaaatgcaatagaaaaaatcaattcaagaaatataatggtaactgcattgcatgcattttcaaaattagtgacac |
329 |
Q |
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| T |
10459557 |
gtaacacatttatagaggagaatttgaaatgcagtagaaaaaatcaattcaagaaatataatggtaactgcattgcatgcattttcaaaattagtgacac |
10459458 |
T |
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| Q |
330 |
ttataactttcataataacttgaaccannnnnnnngaaagaataataacttgaatc--atgtccttttattcaatactgggaaaaatgtagggcaccatg |
427 |
Q |
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| T |
10459457 |
ttataactttcataataacttgaaccattttttttgaaagaataataacttgaatcatatgtccttttattcaatactgggaaaaatgtagggcaccatg |
10459358 |
T |
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| Q |
428 |
taaaa |
432 |
Q |
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||||| |
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| T |
10459357 |
taaaa |
10459353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 10459786 - 10459629
Alignment:
| Q |
1 |
aattgattcaaaaaagaaaattgaaaatacgagagaatttaaaatgggaagagtctttatagctgtagatttaatcaaggggttgcttacttggagtaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10459786 |
aattgattcaaaaaagaaaattgaaaatacgagagaatttaaaatgagaagagtctttatagctgtaaatttaatcaaggggttgcttacttggagtaag |
10459687 |
T |
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| Q |
101 |
ttactagttaaattcctaaaaactaacttaaatctaatttcatcatacctaatattgg |
158 |
Q |
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| T |
10459686 |
ttactagttaaattcctaaaaactaacttaaatctaatttcatcatacctaatattgg |
10459629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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