View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5482_high_2 (Length: 416)
Name: NF5482_high_2
Description: NF5482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5482_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 12 - 402
Target Start/End: Complemental strand, 41548396 - 41548006
Alignment:
| Q |
12 |
atgaataaagaaagtgaatgacaaatcatattgtttgttcacgcaacacattccattaatccattttttccctcacagccatgcttgattgcgaggaaat |
111 |
Q |
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| T |
41548396 |
atgaataaagaaagtgaatgacaaatcatattgtttgttcacgcaacacattccattaatccattttttccctcgcagccatgcttgattgcgaggaaat |
41548297 |
T |
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| Q |
112 |
atcttacatgaggaggacatcccaaaaattgtgagaaaatcagagaaacgagattaataaggcctaaattcaacaacaattactgtgaaggcatagatca |
211 |
Q |
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| T |
41548296 |
atcttacatgaggaggacatcccaaaaattgtgagaaaatcagagaaacgagattaataaggcctaaattcaacaacaattactgtgaaggcataaatca |
41548197 |
T |
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| Q |
212 |
tcgtaattttaaaaacgaaaatggaaaatcaattgataatatctgtaatcatttcgtcaaatgggagaataagtgcatgtagtactnnnnnnntaaaccc |
311 |
Q |
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| T |
41548196 |
tggtaattttaaaaacgaaaatggaaaatccattgataatatctgtaatcatttcgtcaaatgggagaataagtgcatgtagtactaaaaaaataaaccc |
41548097 |
T |
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| Q |
312 |
taggagtaataattggtaaacaatgagaacagattcaaatgaagacgcaatggttcatctatcagtaacatacaacaatcttcaaaaaact |
402 |
Q |
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| T |
41548096 |
taggagtaataattggtaaacaatgagaacagattcaaacgaagacgcaatggttcatctatcagtaacatacaacaatcttcaaaaaact |
41548006 |
T |
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