View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5482_high_7 (Length: 252)

Name: NF5482_high_7
Description: NF5482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5482_high_7
NF5482_high_7
[»] chr8 (7 HSPs)
chr8 (1-242)||(44690109-44690350)
chr8 (86-233)||(37964385-37964532)
chr8 (86-220)||(27409938-27410073)
chr8 (86-204)||(27411005-27411124)
chr8 (85-233)||(37963448-37963597)
chr8 (132-233)||(7274419-7274521)
chr8 (173-217)||(35919237-35919281)
[»] chr2 (14 HSPs)
chr2 (4-233)||(31559294-31559524)
chr2 (1-187)||(9262677-9262863)
chr2 (1-157)||(31558038-31558195)
chr2 (139-216)||(43517851-43517929)
chr2 (139-239)||(28165858-28165962)
chr2 (1-155)||(7317479-7317634)
chr2 (145-215)||(30547821-30547892)
chr2 (139-233)||(40127442-40127537)
chr2 (133-233)||(5696137-5696238)
chr2 (139-239)||(44904730-44904836)
chr2 (95-158)||(22053308-22053371)
chr2 (91-158)||(22060291-22060358)
chr2 (184-233)||(30545994-30546042)
chr2 (141-215)||(44905952-44906028)
[»] chr1 (14 HSPs)
chr1 (1-233)||(9419557-9419791)
chr1 (109-233)||(27524466-27524591)
chr1 (86-220)||(28253383-28253519)
chr1 (4-216)||(28360861-28361078)
chr1 (117-220)||(37401206-37401311)
chr1 (132-233)||(43882243-43882345)
chr1 (146-220)||(37402399-37402474)
chr1 (139-220)||(12097709-12097791)
chr1 (139-215)||(13223115-13223193)
chr1 (143-219)||(35381586-35381663)
chr1 (139-234)||(13229032-13229131)
chr1 (139-239)||(40767823-40767927)
chr1 (143-221)||(12096080-12096159)
chr1 (139-219)||(32849698-32849780)
[»] chr7 (10 HSPs)
chr7 (1-242)||(20207766-20208003)
chr7 (139-215)||(19639753-19639830)
chr7 (139-233)||(41592960-41593055)
chr7 (139-239)||(38756862-38756966)
chr7 (139-233)||(38758082-38758178)
chr7 (2-48)||(20208387-20208433)
chr7 (139-233)||(41384356-41384451)
chr7 (139-219)||(37556301-37556383)
chr7 (143-215)||(5974354-5974427)
chr7 (139-215)||(5975440-5975517)
[»] chr3 (20 HSPs)
chr3 (4-233)||(34594321-34594549)
chr3 (4-219)||(33551675-33551893)
chr3 (1-157)||(34595590-34595747)
chr3 (73-233)||(27661259-27661421)
chr3 (4-217)||(32641170-32641386)
chr3 (108-214)||(27329020-27329127)
chr3 (117-221)||(26537590-26537695)
chr3 (86-233)||(27320432-27320580)
chr3 (139-233)||(27662376-27662471)
chr3 (132-233)||(1677172-1677274)
chr3 (139-219)||(39870651-39870732)
chr3 (144-226)||(26300752-26300841)
chr3 (4-89)||(26537506-26537592)
chr3 (139-216)||(31200720-31200798)
chr3 (146-233)||(27361399-27361487)
chr3 (139-187)||(3026684-3026733)
chr3 (139-215)||(13645049-13645126)
chr3 (139-187)||(39871948-39871997)
chr3 (139-215)||(3149460-3149539)
chr3 (146-233)||(27319669-27319757)
[»] chr4 (6 HSPs)
chr4 (4-217)||(4284143-4284357)
chr4 (4-130)||(4241507-4241632)
chr4 (139-239)||(34538328-34538432)
chr4 (139-214)||(11148548-11148625)
chr4 (134-215)||(2671733-2671815)
chr4 (132-233)||(20946050-20946152)
[»] scaffold0517 (2 HSPs)
scaffold0517 (117-220)||(6765-6870)
scaffold0517 (146-220)||(5602-5677)
[»] chr5 (3 HSPs)
chr5 (139-233)||(33489665-33489760)
chr5 (50-126)||(12890373-12890449)
chr5 (91-157)||(28592257-28592323)
[»] scaffold1176 (1 HSPs)
scaffold1176 (21-158)||(2160-2298)
[»] scaffold1118 (1 HSPs)
scaffold1118 (91-158)||(2592-2659)
[»] chr6 (2 HSPs)
chr6 (86-219)||(28050110-28050245)
chr6 (139-233)||(19580099-19580195)


Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 44690109 - 44690350
Alignment:
Q  1 ttgttaactttttggaattggtccctaacgtcatcttccgttaaaaaatgttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44690109 ttgttaactttttggaattggtccctaacgtcatcttccgttaaaaaatgttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaaca 44690208  T
Q  101 tgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacataggatgaaattaaaaaacgtaatcatcgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44690209 tgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacataggatgaaattaaaaaacgtaatcatcgaa 44690308  T
Q  201 ttttgaaatttaaaaaccaatatttccaccttcctctctctg 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44690309 ttttgaaatttaaaaaccaatatttccaccttcctctctctg 44690350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 233
Target Start/End: Complemental strand, 37964532 - 37964385
Alignment:
Q  86 tgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaa 184  Q
    |||||||||||||  |||| | |||||||||||||| ||||||  ||||| |  ||||||||||||||||||| || ||||||||| |||||||| | ||    
T  37964532 tgagttggcaaaagttgctgaggtggcatgagagatcataagtagtgttaatacagggactaaaaccaaaaacgaaaatttacatagggatgaaaat-aa 37964434  T
Q  185 aaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 233  Q
    |||||||  |||  ||||||||| ||||||||||||  |||||| ||||    
T  37964433 aaacgtagacattaaattttgaattttaaaaaccaaactttccatcttc 37964385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 27409938 - 27410073
Alignment:
Q  86 tgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaa 184  Q
    |||||||||||||  |||| | |||||||||||||| ||||||  ||||| |  ||||||| ||||||||||| || ||||||||| |||||||| ||||    
T  27409938 tgagttggcaaaagttgctgaggtggcatgagagatcataagtagtgttaatacagggacttaaaccaaaaacgaaaatttacatagggatgaaaataaa 27410037  T
Q  185 aaacgtaatcatcgaattttgaaatttaaaaaccaa 220  Q
     ||| ||  |||  ||||||||| ||||||||||||    
T  27410038 taacatagacattaaattttgaattttaaaaaccaa 27410073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 204
Target Start/End: Complemental strand, 27411124 - 27411005
Alignment:
Q  86 tgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaa 184  Q
    |||||||||||||  || | | |||||||||||||||||||||  ||||| |  | |||||||||| ||||||| | ||||||||| |||||||||||||    
T  27411124 tgagttggcaaaagttgatgaagtggcatgagagatgataagtagtgttaatacaaggactaaaactaaaaacacaaatttacatagggatgaaattaaa 27411025  T
Q  185 aaacgtaatcatcgaatttt 204  Q
    |||| ||| |||| ||||||    
T  27411024 aaacctaaacatcaaatttt 27411005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 233
Target Start/End: Original strand, 37963448 - 37963597
Alignment:
Q  85 ttgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacatag-gatgaaattaa 183  Q
    ||||||||||||||  || | | ||||||||||| |||||||||  ||||| |  | |||||||||  ||||||| | ||||| | || |||||||||||    
T  37963448 ttgagttggcaaaagttgatgaggtggcatgagaaatgataagtagtgttaatacaaggactaaaataaaaaacacaaatttatagagagatgaaattaa 37963547  T
Q  184 aaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 233  Q
    ||||| ||| || | ||||||||| ||||||||||||  |||||| ||||    
T  37963548 aaaacctaaacagcaaattttgaattttaaaaaccaaattttccatcttc 37963597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 7274521 - 7274419
Alignment:
Q  132 gttattcgagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccacc 230  Q
    |||||| ||| |||||||||||||||   | ||||||||||| |||||| |||||||| |||||||| || |||||| |||||||   | ||||||||||    
T  7274521 gttattagagagactaaaaccaaaaatgcaaatttacatagggatgaaaataaaaaacataatcatcaaaatttgaattttaaaacttattatttccacc 7274422  T
Q  231 ttc 233  Q
    |||    
T  7274421 ttc 7274419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 35919237 - 35919281
Alignment:
Q  173 gatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaac 217  Q
    |||| ||||||| ||||||||||||||||||| ||||||||||||    
T  35919237 gatgtaattaaacaacgtaatcatcgaattttaaaatttaaaaac 35919281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 31559524 - 31559294
Alignment:
Q  4 ttaactttttggaattggtccctaacgtcatcttccgttaaaaaatgttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaacatgc 103  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| || ||||||||| ||||||||||||||| |     
T  31559524 ttaactttttggaattggtccctaacgtcaacttccgttaaaaaaagttgtgctggctaacggaggcacacatgtcacttgatgagttggcaaaacacgt 31559425  T
Q  104 ttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaatt 202  Q
    |||||||||||||||||||||||||| ||| |||  | ||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||    
T  31559424 ttatgtggcatgagagatgataagtgttgtgattacaaggactaaaaccaaaaacgaatatttacatagggatgaaattaaaacacgtaatcatcgaatt 31559325  T
Q  203 ttgaaatttaaaaaccaatatttccaccttc 233  Q
    |||||||||||||| ||||||||||||||||    
T  31559324 ttgaaatttaaaaatcaatatttccaccttc 31559294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 9262863 - 9262677
Alignment:
Q  1 ttgttaactttttggaattggtccctaacgtcatcttccgttaaaaaatgttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaaca 100  Q
    |||||| |||| ||||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||| | ||||||||||||  |||||||||||||||    
T  9262863 ttgttatctttatggaattggtccctaacgtcaacttccattaaaaaaagttgtgctggctaacggagacttacgtgtcacttactgagttggcaaaaca 9262764  T
Q  101 tgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacataggatgaaattaaaaaa 187  Q
       ||||||||| |||||||||||||||| | | ||| |||||||||||||||||||  || | || ||  ||||||||||||||||    
T  9262763 cagttatgtggcgtgagagatgataagtgttatgattagagggactaaaaccaaaaaagaaaaattgcaagggatgaaattaaaaaa 9262677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 31558038 - 31558195
Alignment:
Q  1 ttgttaactttttggaattggtccctaacgtcatcttccgttaaaaaat-gttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaac 99  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||  ||| || ||||||| ||||||  | |||||||||||||||||||||||||    
T  31558038 ttgttaactttttgaaattggcccctaacgtcaacttctgttaaaaaaaagttttgttggctaatagaggcgcatgtgtcacttgttgagttggcaaaac 31558137  T
Q  100 atgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaa 157  Q
    |||||||||||||||||||||| ||||||||    ||| ||||||| |||||||||||    
T  31558138 atgcttatgtggcatgagagataataagtgactagatttgagggaccaaaaccaaaaa 31558195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 43517929 - 43517851
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaa 216  Q
    |||||||||||||||||||| || ||| ||||| ||||||| |||||||| |||| |||| ||||||||| ||||||||    
T  43517929 gagggactaaaaccaaaaacgaaaattgacatagggatgaatttaaaaaaagtaaacatcaaattttgaattttaaaaa 43517851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 28165858 - 28165962
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacata-gga-tgaaattaaaaaa-cgtaatcatcgaatttt-gaaatttaaaaaccaatatttccaccttcc 234  Q
    ||||||||||||| |||| |  || |||||||| ||| ||||||||||||| |||||||||| |||||| ||||||| ||| ||||| ||||||||||||    
T  28165858 gagggactaaaacgaaaagcgcatttttacataaggactgaaattaaaaaaacgtaatcatcaaatttttgaaattttaaacccaatctttccaccttcc 28165957  T
Q  235 tctct 239  Q
    |||||    
T  28165958 tctct 28165962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 7317479 - 7317634
Alignment:
Q  1 ttgttaactttttggaattggtccctaacgtcatcttccgttaaa-aaatgttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaac 99  Q
    |||||||||||||||  ||||||||||| || | |||| |||| | ||| | | || |||| ||| |||||| ||||||||||   |||  |  ||||||    
T  7317479 ttgttaactttttggttttggtccctaatgttaacttctgttacataaacgctttgttggcaaacggaggcacacgtgtcactcactgacataacaaaac 7317578  T
Q  100 atgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaa 155  Q
    ||||||||||||| ||| ||||||||| |||| | ||| ||| |||||||||||||    
T  7317579 atgcttatgtggcctgacagatgataactgatatgatttgagagactaaaaccaaa 7317634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 30547892 - 30547821
Alignment:
Q  145 ctaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaa 215  Q
    |||||||||||||   ||||||||||| ||| ||||||||||||| |||||||| |||||| ||||||||||    
T  30547892 ctaaaaccaaaaatgtatatttacataaggacgaaattaaaaaacataatcatcaaattttaaaatttaaaa 30547821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 233
Target Start/End: Original strand, 40127442 - 40127537
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 233  Q
    |||||||||||||||||||| || ||| ||||| ||||||| |||||||| |||| |||| |||||| || |||||||| |||  |||||| ||||    
T  40127442 gagggactaaaaccaaaaacgaaaattgacatagggatgaatttaaaaaaagtaaacatcaaattttaaattttaaaaatcaaactttccatcttc 40127537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 5696238 - 5696137
Alignment:
Q  133 ttattcgagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccacct 231  Q
    ||||| ||||||||||||||||||||  | ||||||| ||| | |||| |||||||| |||||||| || |||||| |||||||   | |||||||||||    
T  5696238 ttattagagggactaaaaccaaaaacgtaaatttacacagggacgaaaataaaaaacataatcatcaaaatttgaattttaaaacatattatttccacct 5696139  T
Q  232 tc 233  Q
    ||    
T  5696138 tc 5696137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 44904730 - 44904836
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacatagga--tgaaattaaaaaa---cgtaatcatcgaatttt-gaaatttaaaaaccaatatttccacctt 232  Q
    ||||||||||||  ||||||| || ||||||||||   |||||||||||||   |||||||||| |||||| ||||||| ||| ||||| ||||||||||    
T  44904730 gagggactaaaatgaaaaacacatttttacatagggactgaaattaaaaaaaaacgtaatcatcaaatttttgaaattttaaacccaatctttccacctt 44904829  T
Q  233 cctctct 239  Q
    | |||||    
T  44904830 catctct 44904836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 22053308 - 22053371
Alignment:
Q  95 aaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaac 158  Q
    |||||| ||||||||||| ||| | |||||||||||| | ||| ||||||| ||||||||||||    
T  22053308 aaaacacgcttatgtggcctgacaaatgataagtgatatgatttgagggaccaaaaccaaaaac 22053371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 22060358 - 22060291
Alignment:
Q  91 tggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaac 158  Q
    |||||||||||||||||| ||| ||| | |||||||||||| | ||| ||||||| |||| |||||||    
T  22060358 tggcaaaacatgcttatggggcctgacatatgataagtgatatgatttgagggacgaaaatcaaaaac 22060291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 30545994 - 30546042
Alignment:
Q  184 aaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 233  Q
    ||||| |||||||| ||||||||||||| ||||||| |||||||||||||    
T  30545994 aaaacataatcatcaaattttgaaattt-aaaaccattatttccaccttc 30546042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 44906028 - 44905952
Alignment:
Q  141 gggactaaaaccaaaaacaaatatttacata-ggatgaaatt-aaaaaacgtaatcatcgaattttgaaatttaaaa 215  Q
    |||||||||||||||||   || |||||||| ||| |||||| ||||||| |||||||| ||||||| |||||||||    
T  44906028 gggactaaaaccaaaaatgcatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaatttaaaa 44905952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 9419791 - 9419557
Alignment:
Q  1 ttgttaactttttggaattggtccctaacgtcatcttccgttaaaaa-atgttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaac 99  Q
    |||||||||||| | |||||||||| ||| | | ||||||||||||| | ||||||| |||||||  ||||| || ||||||||  ||||||||||||||    
T  9419791 ttgttaacttttagaaattggtcccaaacattaacttccgttaaaaataagttgtgccggctaacgaaggcacacatgtcactttctgagttggcaaaac 9419692  T
Q  100 atgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcg 198  Q
    | ||||||||||||||| | |||||||||| ||| ||| |||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||     
T  9419691 acgcttatgtggcatgaaatatgataagtgttgtgattagagggaataaaaccaaaaacgaatatttacatagggatgaaattaaaaaacgtaatcatca 9419592  T
Q  199 aattttgaaatttaaaaaccaatatttccaccttc 233  Q
    ||||||||||||||||||||||| |||||||||||    
T  9419591 aattttgaaatttaaaaaccaatctttccaccttc 9419557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 233
Target Start/End: Original strand, 27524466 - 27524591
Alignment:
Q  109 tggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaa 207  Q
    ||||||||||||||||||||  ||||| |  |||||||||||||||||||| | ||||||||| |||||||||| |||||||||| |||| |||||||||    
T  27524466 tggcatgagagatgataagtagtgttagtacagggactaaaaccaaaaacacaaatttacatagggatgaaatttaaaaacgtaaacatcaaattttgaa 27524565  T
Q  208 atttaaaaaccaatatttccaccttc 233  Q
     ||||||||||||  |||||| ||||    
T  27524566 ttttaaaaaccaaactttccatcttc 27524591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 28253519 - 28253383
Alignment:
Q  86 tgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaatt-aa 183  Q
    |||||||||||||  |||| |  ||||||||||||||||||||  ||||| | |||||||||||| |||||||  | ||||||||| |||||||||| ||    
T  28253519 tgagttggcaaaatttgctgagatggcatgagagatgataagtagtgttagtagagggactaaaatcaaaaacgtaaatttacatagggatgaaattaaa 28253420  T
Q  184 aaaacgtaatcatcgaattttgaaatttaaaaaccaa 220  Q
    |||| |||| |||| ||||||||| ||||||||||||    
T  28253419 aaaaggtaaacatcaaattttgaattttaaaaaccaa 28253383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 28360861 - 28361078
Alignment:
Q  4 ttaactttttggaattggtccctaacgtcatcttccgttaaaaaat----gttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaac 99  Q
    ||||||||||||||||| ||||||||||||  ||| |||||||||     | ||||||| | ||| ||||||  ||||||||||| | ||| |||||| |    
T  28360861 ttaactttttggaattgttccctaacgtcaggttcagttaaaaaaaaaaagatgtgctgacaaacggaggcacccgtgtcacttgctaagtaggcaaa-c 28360959  T
Q  100 atgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaatt-aaaaaacgtaatcatc 197  Q
    |  ||||||||||||| ||||||||||||||    ||| |||| || |||| |||||||| | | ||||||| |||||||||| ||||||||||| ||||    
T  28360960 acacttatgtggcatgcgagatgataagtgactagatttgaggaaccaaaatcaaaaacacaaaattacatagggatgaaattgaaaaaacgtaaacatc 28361059  T
Q  198 gaattttgaaatttaaaaa 216  Q
     || ||| ||| |||||||    
T  28361060 aaaatttaaaaattaaaaa 28361078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 220
Target Start/End: Original strand, 37401206 - 37401311
Alignment:
Q  117 gagatgataagtgatgttattcgagggactaaaacc-aaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaa 214  Q
    |||||||||||| |||||| |  ||||||||||||| ||||||| | ||||||||| ||||||| |||||||| |||| |||| ||||||||  ||||||    
T  37401206 gagatgataagtaatgttagtacagggactaaaaccaaaaaacacaaatttacatagggatgaagttaaaaaaggtaaacatcaaattttgatttttaaa 37401305  T
Q  215 aaccaa 220  Q
    ||||||    
T  37401306 aaccaa 37401311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 43882243 - 43882345
Alignment:
Q  132 gttattcgagggactaaaaccaaaaacaaatatttacatag-gatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccacc 230  Q
    |||||| |||||||||||||||||||| || |||||||||| || | || |||||||| |||||||| || |||||| |||||||   | ||||||||||    
T  43882243 gttattagagggactaaaaccaaaaacgaaaatttacatagagacggaaataaaaaacataatcatcaaaatttgaattttaaaacatattatttccacc 43882342  T
Q  231 ttc 233  Q
    |||    
T  43882343 ttc 43882345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 37402474 - 37402399
Alignment:
Q  146 taaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaa 220  Q
    ||||||||||||   | ||||||||||| |||||||||||||||||||  ||| ||||||||| ||||||||||||    
T  37402474 taaaaccaaaaatgcaaatttacatagggatgaaattaaaaaacgtaaaaatcaaattttgaattttaaaaaccaa 37402399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 12097791 - 12097709
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaa 220  Q
    ||||||||||||||||||||  || ||||  |||| ||||||||||||||| |||| ||| | ||||||| ||||||||||||    
T  12097791 gagggactaaaaccaaaaacgcatttttaggtagggatgaaattaaaaaacttaattatcaatttttgaattttaaaaaccaa 12097709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 13223115 - 13223193
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacata-ggatgaaatt-aaaaaacgtaatcatcgaattttgaaatttaaaa 215  Q
    ||||||||||||||||||||  || |||||||| ||| |||||| ||||||| |||||||| ||||||| |||||||||    
T  13223115 gagggactaaaaccaaaaacgcatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaatttaaaa 13223193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 35381586 - 35381663
Alignment:
Q  143 gactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaacca 219  Q
    |||||||| |||||||  || |||||||||| ||| |||||||||| ||||||||| | ||||||| |||||||||||    
T  35381586 gactaaaagcaaaaacgtatttttacatagggatgtaattaaaaaatgtaatcatcaatttttgaattttaaaaacca 35381663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 13229131 - 13229032
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacatagg--atgaaatt-aaaaaacgtaatcatcga-attttgaaatttaaaaaccaatatttccaccttcc 234  Q
    ||||||||||||| ||||||| || ||||||||||   | ||||| |||||||||||||||| |  ||||||||||| ||| ||||| ||||||||||||    
T  13229131 gagggactaaaacgaaaaacacatttttacatagggactaaaattaaaaaaacgtaatcatcaattttttgaaattttaaacccaatctttccaccttcc 13229032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 40767823 - 40767927
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacata-gga-tgaaattaaaaaa-cgtaatcatcgaatttt-gaaatttaaaaaccaatatttccaccttcc 234  Q
    ||||||||||||| ||||||  || |||||||| ||| ||||| ||||||| |||||||||| |||||| |||| || ||| ||||| ||||||||||||    
T  40767823 gagggactaaaacgaaaaacgcatttttacataaggactgaaactaaaaaaacgtaatcatcaaatttttgaaaatttaaacccaatttttccaccttcc 40767922  T
Q  235 tctct 239  Q
    |||||    
T  40767923 tctct 40767927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 12096080 - 12096159
Alignment:
Q  143 gactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaat 221  Q
    ||||||||||||||||  || ||||||  || ||||||||||||||| |||| ||| | ||||||| |||||||||||||    
T  12096080 gactaaaaccaaaaacgcatttttacacggggatgaaattaaaaaacttaattatcaatttttgaattttaaaaaccaat 12096159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 32849780 - 32849698
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaa-cgtaatcatcgaattttgaaatttaaaaacca 219  Q
    ||||||||||||||||||||  || |||||| ||| ||| |||||||||| ||||| |||| | ||||||| |||||||||||    
T  32849780 gagggactaaaaccaaaaacgtatttttacacagggatgtaattaaaaaaacgtaaacatcaatttttgaattttaaaaacca 32849698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 20207766 - 20208003
Alignment:
Q  1 ttgttaactttttggaattggtccctaacgtcatcttccgttaaaaa-atgttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaac 99  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||||||||| ||  || |||||||||||| ||||||||||||||    
T  20207766 ttgttaactttttaaaattggtccctaacgtcaacttccgttaaaaataagttgtgctggctaacggaaacaaacgtgtcacttgctgagttggcaaaac 20207865  T
Q  100 atgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttaca-taggatgaaattaaaaaacgtaatcatcg 198  Q
    | |||||||| ||||||| ||||||||||  ||| ||| |||||||||||||||| |       |||||| | |||||||||||||||| |||||||||     
T  20207866 acgcttatgtcgcatgagcgatgataagtattgtgattagagggactaaaaccaaca------ttttacagtgggatgaaattaaaaaatgtaatcatct 20207959  T
Q  199 aattttgaaatttaaaaaccaatatttccaccttcctctctctg 242  Q
    |||||||||||||||||| |||||||||||||||| ||||||||    
T  20207960 aattttgaaatttaaaaatcaatatttccaccttcatctctctg 20208003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 19639830 - 19639753
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaa 215  Q
    |||||| |||||| ||||||  || |||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  19639830 gagggattaaaacaaaaaacgcatgtttacatagggatgaaattaaaaaacgtaatcatcaaattttgaaatttaaaa 19639753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 233
Target Start/End: Complemental strand, 41593055 - 41592960
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 233  Q
    |||||||||||||||||||| || ||| ||||||| |||||||||||||| |||| |||| ||||||||| |||||||| |||  |||||| ||||    
T  41593055 gagggactaaaaccaaaaacgaaaattgacatagggatgaaattaaaaaaagtaaacatcaaattttgaattttaaaaatcaaactttccatcttc 41592960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 38756862 - 38756966
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacatagga--tgaaattaaaaaa-cgtaatcatcgaatttt-gaaatttaaaaaccaatatttccaccttcc 234  Q
    ||||||||||||| ||||||| || ||||||||||   | ||||||||||| |||||||||| |||||| ||||||| ||| ||||| ||||||||||||    
T  38756862 gagggactaaaacgaaaaacacatttttacatagggactaaaattaaaaaaacgtaatcatcaaatttttgaaattttaaatccaatctttccaccttcc 38756961  T
Q  235 tctct 239  Q
    |||||    
T  38756962 tctct 38756966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 233
Target Start/End: Complemental strand, 38758178 - 38758082
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacata-ggatgaaatt-aaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 233  Q
    ||||||||||||||||||||| || |||||||| ||| |||||| ||||||| |||||||| ||||||| |||||||||  || | |||||||||||    
T  38758178 gagggactaaaaccaaaaacacatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaatttaaaattcattctttccaccttc 38758082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 20208433 - 20208387
Alignment:
Q  2 tgttaactttttggaattggtccctaacgtcatcttccgttaaaaaa 48  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||    
T  20208433 tgttaaatttttggaattggtccctaacgtcaacttccgttaaaaaa 20208387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 233
Target Start/End: Original strand, 41384356 - 41384451
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 233  Q
    |||||||||||||||||||| || ||| ||||| ||||||| ||||||||  ||| |||| |||| |||| |||||||| |||  |||||| ||||    
T  41384356 gagggactaaaaccaaaaacgaaaattgacatagggatgaatttaaaaaaaataaacatcaaattctgaattttaaaaatcaaactttccatcttc 41384451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 37556383 - 37556301
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaa-cgtaatcatcgaattttgaaatttaaaaacca 219  Q
    ||||||||||||||||||||  || |||||| ||| ||| |||||||||| ||||| |||| | ||||||| |||||||||||    
T  37556383 gagggactaaaaccaaaaacgtatttttacacagggatgtaattaaaaaaacgtaaacatcaatttttgaattttaaaaacca 37556301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 5974354 - 5974427
Alignment:
Q  143 gactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaa 215  Q
    ||||||||  ||||||| | ||||||| ||| || |||||||||||| |||||||| || ||||||||||||||    
T  5974354 gactaaaataaaaaacacaaatttacacagggataaaattaaaaaacataatcatcaaagtttgaaatttaaaa 5974427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 5975517 - 5975440
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaa 215  Q
    ||||||||||||| |||||   | ||||||||||| | ||||||||||||| |||||||| || ||| ||||||||||    
T  5975517 gagggactaaaacaaaaaatgcaaatttacatagggacgaaattaaaaaacataatcatcaaaatttaaaatttaaaa 5975440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 34594321 - 34594549
Alignment:
Q  4 ttaactttttggaattggtccctaacgtcatcttccgttaaaaaat-gttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaacatg 102  Q
    |||||||||||||||||||||||||||| ||||||||||||||||  |||||| || |||||||||||| || ||||||||||| ||||| ||| | | |    
T  34594321 ttaactttttggaattggtccctaacgtaatcttccgttaaaaaaaagttgtgttgtctaacagaggcacacatgtcacttgttaagttgtcaagatacg 34594420  T
Q  103 cttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaat 201  Q
    |||| ||| ||||||||| ||||| || ||| ||| ||||||||||||||||||||  | ||||||||| ||||||||||||||||| ||||||| ||||    
T  34594421 cttacgtgacatgagagacgataattgttgtgattagagggactaaaaccaaaaacggaaatttacatagggatgaaattaaaaaacataatcattgaat 34594520  T
Q  202 tttgaaatttaaaaaccaatatttccaccttc 233  Q
    |||||   |||||||||||| |||||| ||||    
T  34594521 tttga---ttaaaaaccaatctttccatcttc 34594549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 33551675 - 33551893
Alignment:
Q  4 ttaactttttggaattggtccctaacgtcatcttccg-ttaaaaaatgttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaacatg 102  Q
    ||||||||||||||||| ||||||||||||  ||||| |||||||| |||||||||| |||| |||||| || ||||||||| ||||| ||||||||| |    
T  33551675 ttaactttttggaattgatccctaacgtcaggttccgcttaaaaaaagttgtgctggttaacggaggcacacatgtcacttgctgagtcggcaaaacacg 33551774  T
Q  103 cttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaatta-aaaaacgtaatcatcgaa 200  Q
    ||||||||||||||||||||||||||||    ||| || |||  ||||||||||||| | | || || | |||||||| || |||||||||| |||| ||    
T  33551775 cttatgtggcatgagagatgataagtgactagatttgaaggatcaaaaccaaaaacacaaaattgcacagggatgaaactagaaaaacgtaaacatcaaa 33551874  T
Q  201 ttttgaaatttaaaaacca 219  Q
     ||||||||| ||||||||    
T  33551875 atttgaaattaaaaaacca 33551893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 34595747 - 34595590
Alignment:
Q  1 ttgttaactttttggaattggtccctaacgtcatcttccgttaaaaa-atgttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaac 99  Q
    |||||||| ||||| |||||||||||||| ||| ||| ||||||||| ||| |||| |||||||||||||||  | | ||||||| ||||||||||||||    
T  34595747 ttgttaaccttttgaaattggtccctaacatcaactttcgttaaaaagatggtgtgatggctaacagaggcacgcatatcacttgctgagttggcaaaac 34595648  T
Q  100 atgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaa 157  Q
    | ||||||||||||||| ||||| |||||| ||| ||| |||||||||||||||||||    
T  34595647 acgcttatgtggcatgaaagatggtaagtgttgtgattagagggactaaaaccaaaaa 34595590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 233
Target Start/End: Original strand, 27661259 - 27661421
Alignment:
Q  73 acgtgtcacttgttgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata- 171  Q
    ||||| || ||| |||| ||| |||||| |||||||||||||||||||||| || || ||||| | ||||||||||||| || |||| |||||||||||     
T  27661259 acgtgacaattgatgagatggaaaaacacgcttatgtggcatgagagatgacaactggtgttagtagagggactaaaacaaataacacatatttacatag 27661358  T
Q  172 ggatgaaattaaa-aaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 233  Q
    || |||||||||| ||| ||||||||  |||||||||||||||||  ||| ||||||||||||    
T  27661359 gggtgaaattaaagaaatgtaatcataaaattttgaaatttaaaactcaaaatttccaccttc 27661421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 32641170 - 32641386
Alignment:
Q  4 ttaactttttggaattggtccctaacgtcatcttccgttaaaaaat-gttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaacatg 102  Q
    ||||| ||||||||||||||| ||| || |  || ||||||||||  |||||||| ||||||||||||| || || ||||||||||| || ||||||| |    
T  32641170 ttaacattttggaattggtccttaatgttaggtttcgttaaaaaaaagttgtgctagctaacagaggcacacatgccacttgttgagctgacaaaacacg 32641269  T
Q  103 cttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaatt-aaaaaacgtaatcatcgaa 200  Q
     ||||||||||||| |||| |||||||||   ||| ||||||| |||| |||||||  | | || || | |||||||||| ||||||||||| |||| ||    
T  32641270 tttatgtggcatgaaagataataagtgattagatttgagggaccaaaatcaaaaacgcaaaattgcagagggatgaaattgaaaaaacgtaaacatcaaa 32641369  T
Q  201 ttttgaaatttaaaaac 217  Q
     ||| ||||||||||||    
T  32641370 atttaaaatttaaaaac 32641386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 27329020 - 27329127
Alignment:
Q  108 gtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttga 206  Q
    |||||||||||||||||||||  ||||| |  | |||||||||||||||||| | ||||||||| ||||||||||||||||| ||| |||| ||||||||    
T  27329020 gtggcatgagagatgataagtagtgttaatacaaggactaaaaccaaaaacacaaatttacatagggatgaaattaaaaaacctaaacatcaaattttga 27329119  T
Q  207 aatttaaa 214  Q
    | ||||||    
T  27329120 attttaaa 27329127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 26537590 - 26537695
Alignment:
Q  117 gagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaa 215  Q
    ||||||| || || ||||| | |||||||||||| |||||||| ||||||| ||| |||||||||||||||||||||||||| ||||||  |||||||||    
T  26537590 gagatgacaattggtgttagtagagggactaaaatcaaaaacacatatttaaataaggatgaaattaaaaaacgtaatcatcaaattttacaatttaaaa 26537689  T
Q  216 accaat 221  Q
     |||||    
T  26537690 cccaat 26537695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 233
Target Start/End: Complemental strand, 27320580 - 27320432
Alignment:
Q  86 tgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaa 184  Q
    |||||||||||||  || | | |||||||||||||| ||||||  ||||| |  ||||||||||| ||||||| || ||||||||| |||||||| ||||    
T  27320580 tgagttggcaaaagttgttgaggtggcatgagagatcataagtagtgttaatacagggactaaaatcaaaaacgaaaatttacatagggatgaaaataaa 27320481  T
Q  185 aaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 233  Q
    |||||||  |||  ||||||||| ||||||||||||  |||||| ||||    
T  27320480 aaacgtagacattaaattttgaattttaaaaaccaaactttccatcttc 27320432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 233
Target Start/End: Complemental strand, 27662471 - 27662376
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacataggatgaaattaa-aaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 233  Q
    ||||||||||||| ||||||  ||||||||| |||| |||||||| ||||| |||| ||| ||||||||||||||||| ||  |||||||||||||    
T  27662471 gagggactaaaactaaaaacgcatatttacagaggacgaaattaaaaaaacataattatcaaattttgaaatttaaaatcctttatttccaccttc 27662376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 1677172 - 1677274
Alignment:
Q  132 gttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccacc 230  Q
    |||||| ||||||||||||||||||||  | ||||||||| ||| |||| ||||||||||||||||| || |||||| |||||||   | ||||||||||    
T  1677172 gttattagagggactaaaaccaaaaacgcaaatttacatagggacgaaaataaaaaacgtaatcatcaaaatttgaattttaaaacatattatttccacc 1677271  T
Q  231 ttc 233  Q
    |||    
T  1677272 ttc 1677274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 39870651 - 39870732
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaacca 219  Q
    |||||||||||| |||||||  || |||||||||| ||| |||||||||||||||||||| | ||||||| |||||||||||    
T  39870651 gagggactaaaatcaaaaacgtatttttacatagggatgtaattaaaaaacgtaatcatcaatttttgaattttaaaaacca 39870732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 226
Target Start/End: Original strand, 26300752 - 26300841
Alignment:
Q  144 actaaaaccaaaaacaaatatttacata-ggatgaaatt------aaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttc 226  Q
    ||||||||||||||||||||||| |||| ||||||||||      ||||||||||| ||| |||||||||||||| ||||||||| ||||    
T  26300752 actaaaaccaaaaacaaatatttgcatagggatgaaattgaaaaaaaaaaacgtaaacattgaattttgaaattttaaaaccaatctttc 26300841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 26537506 - 26537592
Alignment:
Q  4 ttaactttttggaattggtccctaacgtcatcttccgtt-aaaaaatgttgtgctggctaacagaggcatacgtgtcacttgttgag 89  Q
    |||||||||||||||||||||||||||||| ||||| || |||||| ||| || |||| ||| |||||| || ||||||||| ||||    
T  26537506 ttaactttttggaattggtccctaacgtcaacttccattaaaaaaaagttttgatggccaacggaggcacacatgtcacttgatgag 26537592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 31200798 - 31200720
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaa 216  Q
    ||||||||||||||||||||||| ||| ||||||| ||||| || ||||| |||| |||| ||||||||| ||||||||    
T  31200798 gagggactaaaaccaaaaacaaaaattgacataggcatgaattttaaaaaagtaaacatcaaattttgaattttaaaaa 31200720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 27361399 - 27361487
Alignment:
Q  146 taaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 233  Q
    |||||||||||||| | ||||||||||| ||||||||||||||| |||  ||| ||||||||| |||||||| |||  |||||| ||||    
T  27361399 taaaaccaaaaacacaaatttacatagggatgaaattaaaaaacctaaatatcaaattttgaattttaaaaatcaaattttccatcttc 27361487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 3026733 - 3026684
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaa 187  Q
    ||||||||||||||||||||| || |||||||| ||||| ||||||||||    
T  3026733 gagggactaaaaccaaaaacatatttttacatagggatgtaattaaaaaa 3026684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 13645049 - 13645126
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaa 215  Q
    ||||||||||||||||||||  | ||||||||| ||| |||| |||||||| |||| ||| || |||||||| |||||    
T  13645049 gagggactaaaaccaaaaacgcaaatttacatagggacgaaaataaaaaacataataatcaaaatttgaaatgtaaaa 13645126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 39871997 - 39871948
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaa 187  Q
    ||||||||||||||||||||| || |||||||| ||||| ||||||||||    
T  39871997 gagggactaaaaccaaaaacatatttttacatagggatgtaattaaaaaa 39871948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 3149460 - 3149539
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacata-ggatgaaatt--aaaaaacgtaatcatcgaattttgaaatttaaaa 215  Q
    ||||||||||||||||| ||  || |||||||| ||| ||||||  ||||||| |||||||| ||||||| |||||||||    
T  3149460 gagggactaaaaccaaagacgcatttttacatagggacgaaattaaaaaaaacataatcatcaaattttggaatttaaaa 3149539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 27319669 - 27319757
Alignment:
Q  146 taaaaccaaaaacaaatatttacataggat-gaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 233  Q
    ||||||||| |||| | ||||||||||| | ||||||||||||| |||  ||| ||||||||| |||||||| |||  |||||| ||||    
T  27319669 taaaaccaagaacacaaatttacatagggttgaaattaaaaaacctaaatatcaaattttgaattttaaaaatcaaattttccatcttc 27319757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 217
Target Start/End: Complemental strand, 4284357 - 4284143
Alignment:
Q  4 ttaactttttggaattggtccctaacgtcatcttccgttaaaaaatgttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaacatgc 103  Q
    |||||||||||||||||||||||||| |||  |||||||||||||  ||||| ||||||||||||||| | |||||||||| ||||||||||||  |  |    
T  4284357 ttaactttttggaattggtccctaacatcaggttccgttaaaaaaaattgtgttggctaacagaggcacatgtgtcacttgctgagttggcaaagtacac 4284258  T
Q  104 ttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacatagga-tgaaatt-aaaaaacgtaatcatcgaat 201  Q
    |||||| |||||| |||||||||||||    ||| ||||||| ||||||||||||  | | || || |||| ||||||| ||||||||||| ||||  |     
T  4284257 ttatgt-gcatgaaagatgataagtgactagatttgagggaccaaaaccaaaaacgcaaaattgcagaggagtgaaattgaaaaaacgtaaacatcataa 4284159  T
Q  202 tttgaaatttaaaaac 217  Q
    ||||||||||||||||    
T  4284158 tttgaaatttaaaaac 4284143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 4241632 - 4241507
Alignment:
Q  4 ttaactttttggaattggtccctaacgtcatcttccgttaaaaaatgttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaacatgc 103  Q
    |||| |||||||||||||||||||| ||||  ||| |||||||||  ||||| ||||||||||||||| | |||||||||| |||||||||||| ||  |    
T  4241632 ttaaatttttggaattggtccctaatgtcaggttctgttaaaaaaaattgtgttggctaacagaggcacatgtgtcacttgctgagttggcaaagcacac 4241533  T
Q  104 ttatgtggcatgagagatgataagtga 130  Q
     ||||| |||||| |||||||||||||    
T  4241532 ctatgt-gcatgaaagatgataagtga 4241507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 34538328 - 34538432
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacatagga--tgaaattaaaaaa-cgtaatcatcgaatttt-gaaatttaaaaaccaatatttccaccttcc 234  Q
    ||||||||||||| ||||||  || ||||||||||   ||||||||||||| |||||||||| |||||| ||||||| ||| ||||| ||||||||||||    
T  34538328 gagggactaaaacgaaaaacgcatttttacatagggactgaaattaaaaaaacgtaatcatcaaatttttgaaattttaaacccaatctttccaccttcc 34538427  T
Q  235 tctct 239  Q
    |||||    
T  34538428 tctct 34538432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 11148548 - 11148625
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacata-ggatgaaatt-aaaaaacgtaatcatcgaattttgaaatttaaa 214  Q
    ||||||||||||||||||||| || |||||||| ||| |||||| ||||||| |||||||| ||||||| ||||||||    
T  11148548 gagggactaaaaccaaaaacacatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaatttaaa 11148625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 2671733 - 2671815
Alignment:
Q  134 tattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaa 215  Q
    |||| ||||||||||||||||||||  | ||||||||| ||| |||| |||||||| |||||||| || |||||| |||||||    
T  2671733 tattagagggactaaaaccaaaaacgcaaatttacatagggacgaaaataaaaaacataatcatcaaaatttgaattttaaaa 2671815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 20946050 - 20946152
Alignment:
Q  132 gttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccacc 230  Q
    |||||| ||||||||||||||||||||| | ||||||| | ||| |||| |||||||  |||||||| || |||||| |||||||   | ||||||||||    
T  20946050 gttattagagggactaaaaccaaaaacacaaatttacacagggacgaaaataaaaaatataatcatcaaaatttgaattttaaaacatattatttccacc 20946149  T
Q  231 ttc 233  Q
    |||    
T  20946150 ttc 20946152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 220
Target Start/End: Complemental strand, 6870 - 6765
Alignment:
Q  117 gagatgataagtgatgttattcgagggactaaaaccaaaaa-caaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaa 214  Q
    |||||||||||| |||||| |  |||||||||||||||||| || | ||||||||||| ||||| |||||||| |||| |||| ||||||||  ||||||    
T  6870 gagatgataagtaatgttagtacagggactaaaaccaaaaaacacaaatttacatagggatgaagttaaaaaaggtaaacatcaaattttgatttttaaa 6771  T
Q  215 aaccaa 220  Q
    ||||||    
T  6770 aaccaa 6765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 5602 - 5677
Alignment:
Q  146 taaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaa 220  Q
    ||||||||||||   | ||||||||||| |||||||||||||||||||  ||| ||||||||| ||||||||||||    
T  5602 taaaaccaaaaatgcaaatttacatagggatgaaattaaaaaacgtaaaaatcaaattttgaattttaaaaaccaa 5677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 233
Target Start/End: Complemental strand, 33489760 - 33489665
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 233  Q
    |||||||||| |||||||||  || |||||||||| | | ||||||||||| |||||||| |||||||||||||||||  || | |||||||||||    
T  33489760 gagggactaataccaaaaacgcatttttacatagggacggaattaaaaaacataatcatcaaattttgaaatttaaaattcattctttccaccttc 33489665  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 12890373 - 12890449
Alignment:
Q  50 gttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaacatgcttatgtggcatgagagatgataa 126  Q
    |||||| |||||||| ||| || || |||||||||  |||||||||||||| |||||||| |||||| |||||||||    
T  12890373 gttgtgatggctaacggagtcacacatgtcacttgccgagttggcaaaacacgcttatgttgcatgaaagatgataa 12890449  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 28592257 - 28592323
Alignment:
Q  91 tggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaa 157  Q
    |||||||||| ||||||||||| ||| |||||||||||||| | ||| ||||||| |||||| ||||    
T  28592257 tggcaaaacacgcttatgtggcctgacagatgataagtgatatgatttgagggaccaaaacccaaaa 28592323  T

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Target: scaffold1176 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 2160 - 2298
Alignment:
Q  21 gtccctaacgtcatcttccgtta-aaaaatgttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaacatgcttatgtggcatgagag 119  Q
    ||||||||||| | |||| |||| ||||| |||| |||||| ||| ||| || ||||| || ||  |||  |||||||||| ||||||||||| ||| |     
T  2160 gtccctaacgttaacttctgttacaaaaacgttgagctggcaaacggagtcacacgtggcaattactgacgtggcaaaacacgcttatgtggcctgaaaa 2259  T
Q  120 atgataagtgatgttattcgagggactaaaaccaaaaac 158  Q
    |||||||||||| | ||| ||||||| ||||||||||||    
T  2260 atgataagtgatatgatttgagggaccaaaaccaaaaac 2298  T

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Target: scaffold1118 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1118
Description:

Target: scaffold1118; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 158
Target Start/End: Original strand, 2592 - 2659
Alignment:
Q  91 tggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaac 158  Q
    |||||||||||||||||| ||| ||| | ||||||| |||| | ||| ||||||| ||||||||||||    
T  2592 tggcaaaacatgcttatggggcctgacatatgataaatgatatgatttgagggacgaaaaccaaaaac 2659  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 28050245 - 28050110
Alignment:
Q  86 tgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaatt-aa 183  Q
    |||||||||||||  |||| |  || |||||||||||||||||  ||||    ||||||||||||  ||||||  |||||||| || |||||||||| ||    
T  28050245 tgagttggcaaaagttgctgagatgacatgagagatgataagtattgttggcagagggactaaaataaaaaacgcatatttacgtagggatgaaattaaa 28050146  T
Q  184 aaaacgtaatcatcgaattttgaaatttaaaaacca 219  Q
    |||| |||| |||| || ||| ||||||||||||||    
T  28050145 aaaaagtaaacatcaaaatttaaaatttaaaaacca 28050110  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 233
Target Start/End: Original strand, 19580099 - 19580195
Alignment:
Q  139 gagggactaaaaccaaaaacaaatatttacata-ggatgaaatt-aaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 233  Q
    |||||||||||||||||||| || ||| ||||| ||||||| || |||||| |||| |||| |||||| || |||||||| |||  |||||| ||||    
T  19580099 gagggactaaaaccaaaaacgaaaattaacatagggatgaatttaaaaaaaagtaaacatcaaatttttaattttaaaaatcaaactttccatcttc 19580195  T

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