View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5482_low_1 (Length: 420)
Name: NF5482_low_1
Description: NF5482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5482_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 10 - 403
Target Start/End: Original strand, 34011959 - 34012360
Alignment:
| Q |
10 |
attatactccaaaagctagctaccatccatcagtttcctttcatgttctctcttcccacctcactcttaccctttgcatgcatctcatttcccttaatat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34011959 |
attatactccaaaagctagctaccatccatcagtttcctttcatgttctctcttcccacctcactcttaccctttgcatgcatctcatttcccttaatat |
34012058 |
T |
|
| Q |
110 |
aactaactaaccacttcattttttcttcatnnnnnnnnnnnnntt--------gatcatatatcctccatccatggcccccgatcaacatcactcaagtt |
201 |
Q |
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||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34012059 |
aactaactaaccactcaattttttcttcattctctctctctctctctctctctgatcatatatcctccatccatggcccccgatcaacatcactcaagtt |
34012158 |
T |
|
| Q |
202 |
ttaattcaaacatgcaacactattactacaacaccactgatgatgacatcgacgatatcgtcaacaacgaggttgttaacgatagcgacgagtacgagga |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34012159 |
ttaattcaaacatgcaacactattactacaacaccactgatgatgacatcgacgatatcgtcaacaacgaggttgttaacgatagcgacgagtacgagga |
34012258 |
T |
|
| Q |
302 |
ggacgagtatcagtatcactacgaagaagattatgaaaaagaagaaaccaaacagccacaaaaacgttgttcatcttctttttcattgagtaaggtatta |
401 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34012259 |
ggacgagtatcagtatcactacgaagaagatgatgaaaaagaagaaaccaaacagccacaaaaacgttgttcatcttctttttcattgagtaaggtatta |
34012358 |
T |
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| Q |
402 |
ct |
403 |
Q |
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|| |
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| T |
34012359 |
ct |
34012360 |
T |
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