View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5482_low_10 (Length: 238)
Name: NF5482_low_10
Description: NF5482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5482_low_10 |
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| [»] scaffold0536 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 48952115 - 48952336
Alignment:
| Q |
1 |
ttcatcgatggtactgacggaggagaggttttcgatgccatccgtgaggccaacttcttgggaagggaattgaaaggtttgaacgttgaagttgttgtta |
100 |
Q |
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| T |
48952115 |
ttcatcgatggtactgacggaagagaggttttcgatgccatcggggaggccaacttcttgggaagggaattgaaaggtttgaaagttgaagttgttgtta |
48952214 |
T |
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| Q |
101 |
gatttgggaaggattttagcatttgaatgagtggttatgattgtaacaaagtggccacgtgaagcaaagagagaagctatgtcacatagagggatcatgt |
200 |
Q |
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| T |
48952215 |
gatttgggaaggattttagcatttgaatgagtggttatgattgtaacaaagtgaccacgtgaagcaaagagagaagctatgtcacataaagggatcatgt |
48952314 |
T |
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| Q |
201 |
gccctgctgctaagtatggaat |
222 |
Q |
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| T |
48952315 |
gccctgctgctaagtatggaat |
48952336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 48911474 - 48911422
Alignment:
| Q |
164 |
gcaaagagagaagctatgtcacatagagggatcatgtgccctgctgctaagta |
216 |
Q |
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| T |
48911474 |
gcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgctaagta |
48911422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 746 - 542
Alignment:
| Q |
15 |
tgacggaggagaggttttcgatgccatccgtgaggccaacttcttgggaagggaattgaaaggtttgaacgttgaagttgttgttagatttgggaaggat |
114 |
Q |
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| T |
746 |
tgacagaggacaggttttcaatgccgtccgggaggccaacttcttgggaagggaattgaaaggtgtgaacgttgaagttgttg---gatttgggtaggat |
650 |
T |
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| Q |
115 |
tttagcatttgaatgagtggttatgattgtaacaaagtggccacgtgaagcaaagagagaagctatgtcacatagagggatcatgtgccctgctgctaag |
214 |
Q |
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| T |
649 |
ttgagcgtttgaaggagtggtgatgattttaacaaagtggccacgtgaagcaaagagagaggcaatgtcacaaagagggatcatgtgacctgctgctaga |
550 |
T |
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| Q |
215 |
tatggaat |
222 |
Q |
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|||||||| |
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| T |
549 |
tatggaat |
542 |
T |
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