View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5482_low_11 (Length: 219)
Name: NF5482_low_11
Description: NF5482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5482_low_11 |
 | |
|
| [»] scaffold0339 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0339 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: scaffold0339
Description:
Target: scaffold0339; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 16054 - 16240
Alignment:
| Q |
18 |
ctaacttcagctggttctgtattagggaaaggcaaggatgctgattgggtgcaaaaagctaatatagctttgaataaggtatatctcgtttcattgtgta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16054 |
ctaacttcagctggttctgtattagggaaaggcaaggatgctgattgggtgcaaaaagctaatatagctttgaataaggtatatctcgtttcattgtgta |
16153 |
T |
|
| Q |
118 |
tgtttggaatcacagtgacaccgcggttctatgaaactcgtgtcaattcaaacatgcacttaaatgcattcactgtgaacccctttg |
204 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16154 |
tgtttggaatcacagtgacaccacggttctatgaaactcgtgtcaattcaaacatgcacttaaatgcattcactgtgaacccctttg |
16240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0339; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 2925 - 2866
Alignment:
| Q |
145 |
tctatgaaactcgtgtcaattcaaacatgcacttaaatgcattcactgtgaacccctttg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2925 |
tctatgaaactcgtgtcaattcaaacatgcacttaaatgcattcactgtgaacccctttg |
2866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 47273700 - 47273641
Alignment:
| Q |
145 |
tctatgaaactcgtgtcaattcaaacatgcacttaaatgcattcactgtgaacccctttg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47273700 |
tctatgaaactcgtgtcaattcaaacatgcacttaaatgcattcactgtgaacccctttg |
47273641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 47296422 - 47296385
Alignment:
| Q |
86 |
tttgaataaggtatatctcgtttcattgtgtatgtttg |
123 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47296422 |
tttgaataaggtatatcttgtttcattgtgtatgtttg |
47296385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University