View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5482_low_4 (Length: 329)
Name: NF5482_low_4
Description: NF5482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5482_low_4 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 318
Target Start/End: Complemental strand, 221222 - 220921
Alignment:
| Q |
17 |
aaagattaatgttttgaaaggcctattgagtagctggatttttctggtggtaatggcctcaacagtatgctttcaagtcataatagttgaattccttggt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
221222 |
aaagattaatgttttgaaaggcctattgagtagctggatttttctgatggtaatggcctcaacagtatgctttcaagtcataatagttgaattccttggt |
221123 |
T |
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| Q |
117 |
gcttttgctcaaacagtgccactgagtagagacttatggttaacaagtgtgatgattggtgctgtaagtttggtagtagctgttgtcttaaagtgcattc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
221122 |
gcttttgctcaaacagtgccactgagtagagacttatggttaacaagtgtgatgattggtgctgtaagtttagtagtagctgttgtcttaaagtgcattc |
221023 |
T |
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| Q |
217 |
cagtccctgtcaaaaattacgttgcaacacatcatgatggttatgagcagctcccaactggaccagagttggcatgaatataatacatggttccctatgc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
221022 |
cagtccctgtcaaaaattacgttgcaacacatcatgatggttatgagcaactcccaactggaccagagttggcatgaatataatacatggttctctatgc |
220923 |
T |
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| Q |
317 |
ta |
318 |
Q |
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|| |
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| T |
220922 |
ta |
220921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 318
Target Start/End: Original strand, 14596156 - 14596457
Alignment:
| Q |
17 |
aaagattaatgttttgaaaggcctattgagtagctggatttttctggtggtaatggcctcaacagtatgctttcaagtcataatagttgaattccttggt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14596156 |
aaagattaatgttttgaaaggcctattgagtagctggatttttctgatggtaatggcctcaacagtatgctttcaagtcataatagttgaattccttggt |
14596255 |
T |
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| Q |
117 |
gcttttgctcaaacagtgccactgagtagagacttatggttaacaagtgtgatgattggtgctgtaagtttggtagtagctgttgtcttaaagtgcattc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14596256 |
gcttttgctcaaacagtgccactgagtagagacttatggttaacaagtgtgatgattggtgctgtaagtttagtagtagctgttgtcttaaagtgcattc |
14596355 |
T |
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| Q |
217 |
cagtccctgtcaaaaattacgttgcaacacatcatgatggttatgagcagctcccaactggaccagagttggcatgaatataatacatggttccctatgc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14596356 |
cagtccctgtcaaaaattacgttgcaacacatcatgatggttatgagcaactcccaactggaccagagttggcatgaatataatacatggttctctatgc |
14596455 |
T |
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| Q |
317 |
ta |
318 |
Q |
| |
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|| |
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| T |
14596456 |
ta |
14596457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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