View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5482_low_9 (Length: 238)
Name: NF5482_low_9
Description: NF5482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5482_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 44228955 - 44229175
Alignment:
| Q |
1 |
catgcccatgctttttctaattcacatgcatgcaagtgtgctatagctggccaactagtcttagctgctaagtagttactaaagagagtgaataacaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44228955 |
catgcccatgctttttctaattcacatgcatgcaagtgtgctatagccggccaactagtcttagctgctaagtagttactaaagagagtgaataacaaaa |
44229054 |
T |
|
| Q |
101 |
gcaaaagnnnnnnnntggatgtacttcaattcttatttgtatttctcttttctgctagatttggccaaaacacatgttttgacgtttcatttatcaaatt |
200 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44229055 |
gcaaaag-aaaaaaatggatatacttcaattcttatttgtatttctcttttctgctttatttggccaaaacacatgttttgacgtttcatttgtcaaatt |
44229153 |
T |
|
| Q |
201 |
cttactttgattggagatatat |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
44229154 |
cttactttgattggagatatat |
44229175 |
T |
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