View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5484_high_1 (Length: 584)
Name: NF5484_high_1
Description: NF5484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5484_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 524; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Original strand, 42211902 - 42212465
Alignment:
| Q |
1 |
gggataagaaaactaaggaagataagttgaagatagaagtaggaagcttgccggtgaagttattctctgagagttgaagtcttgaaagattgtggagatt |
100 |
Q |
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| T |
42211902 |
gggataagaaaactaaggaagataagttgaagatagaagtaggaagcttgccggtgaagttattctctgagagttgaagtcttgaaagattgtggagatt |
42212001 |
T |
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| Q |
101 |
gcccaattcacttggaatttcaccctcaagcatgttccttgccatggaaagattcttgagagataagagattgccaaaggttgaaggaatttgacctgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
42212002 |
gcccaattcacttggaatttcaccctcaagcatgttccttgccatggaaagattcttgagagataagagattgccaaaggttgaaggaattttaccagtg |
42212101 |
T |
|
| Q |
201 |
agattattgacagaaaagtctaaagtctgtagattatggagttgacccaattgtggtggaagtgtaccattgagatcgttcatagctaattgaatgacat |
300 |
Q |
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| T |
42212102 |
agattattgacagaaaagtctaaactttgtagattatggagttgacccaattgtggtggaagtgtgccattgagatcgttcatagctaattgaatgacat |
42212201 |
T |
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| Q |
301 |
tgaggagtgagagatgagaaaattggaatggaatttggccatggagagtgttattggaaaggtcaagtgaatgaaggtaagtgaggttggagaggttaga |
400 |
Q |
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| T |
42212202 |
tgaggagtgagagatgagaaaattggaatggaatttggccatgaaaagtgttattggaaaggtcaagtgaatgaaggtaagtgaggttggagaggttaga |
42212301 |
T |
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| Q |
401 |
gggtagtttacctgagaggccaagtccccgtaaggttagagattgaactctttcatcaactttggaacagttgacaccgtaccaggtacagtgattagaa |
500 |
Q |
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| T |
42212302 |
gggtagtttaccagagaggccaagtccccgtaaggttagagattgaactctttcatcaactttggaacagttgacaccataccaggtacaatgattagaa |
42212401 |
T |
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| Q |
501 |
tcttgtttccaactggacaaggcattgtttggatcagttacttgtaatttgaatgatagaagaa |
564 |
Q |
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| T |
42212402 |
tcttgtttccaactggacaaggcattgtttggatcagttacttgtaatttgaatgatagaagaa |
42212465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Original strand, 42224118 - 42224681
Alignment:
| Q |
1 |
gggataagaaaactaaggaagataagttgaagatagaagtaggaagcttgccggtgaagttattctctgagagttgaagtcttgaaagattgtggagatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224118 |
gggataagaaaactaaggaagataagttgaagatagaagtaggaagcttgccggtgaagttattctctgagagttgaagtcttgaaagattgtggagatt |
42224217 |
T |
|
| Q |
101 |
gcccaattcacttggaatttcaccctcaagcatgttccttgccatggaaagattcttgagagataagagattgccaaaggttgaaggaatttgacctgtg |
200 |
Q |
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| T |
42224218 |
gcccaattcacttggaatttcaccctcaagcatgttccttgccatggaaagattcttgagagataagagattgccaaaggttgaaggaatttgacctgtg |
42224317 |
T |
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| Q |
201 |
agattattgacagaaaagtctaaagtctgtagattatggagttgacccaattgtggtggaagtgtaccattgagatcgttcatagctaattgaatgacat |
300 |
Q |
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| T |
42224318 |
agattattgacagaaaagtctaaactctgtagattatggagttgacccaattgtggtggaagtgtgccattgagatcgttcatagctaattgaatgacat |
42224417 |
T |
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| Q |
301 |
tgaggagtgagagatgagaaaattggaatggaatttggccatggagagtgttattggaaaggtcaagtgaatgaaggtaagtgaggttggagaggttaga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224418 |
tgaggagtgagagatgagaaaattggaatggaatttggccatgaaaagtgttattggaaaggtcaagtgaatgaaggtaagtgaggttggagaggttagg |
42224517 |
T |
|
| Q |
401 |
gggtagtttacctgagaggccaagtccccgtaaggttagagattgaactctttcatcaactttggaacagttgacaccgtaccaggtacagtgattagaa |
500 |
Q |
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|||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
42224518 |
gggtagtttaccagagagtttaagtcctgataaggttagagattgaactctttcatcaactttggaacagttgacaccataccaggtacaatgattagaa |
42224617 |
T |
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| Q |
501 |
tcttgtttccaactggacaaggcattgtttggatcagttacttgtaatttgaatgatagaagaa |
564 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224618 |
tcttgtttccaactggacaaagcattgtttggatcagttacttgtaatttgaatgatagaagaa |
42224681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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