View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5484_low_10 (Length: 239)

Name: NF5484_low_10
Description: NF5484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5484_low_10
NF5484_low_10
[»] chr5 (3 HSPs)
chr5 (1-223)||(23909634-23909856)
chr5 (112-219)||(17713745-17713848)
chr5 (112-215)||(29633864-29633970)
[»] chr8 (5 HSPs)
chr8 (112-223)||(18450487-18450598)
chr8 (66-215)||(29388728-29388875)
chr8 (114-223)||(20685329-20685438)
chr8 (112-178)||(16722050-16722117)
chr8 (149-220)||(14756009-14756080)
[»] chr2 (4 HSPs)
chr2 (112-222)||(23469458-23469569)
chr2 (112-201)||(29798915-29799005)
chr2 (112-223)||(17502372-17502486)
chr2 (168-223)||(13312838-13312894)
[»] scaffold0067 (2 HSPs)
scaffold0067 (112-219)||(12761-12868)
scaffold0067 (112-219)||(19819-19926)
[»] chr4 (6 HSPs)
chr4 (116-223)||(18618575-18618682)
chr4 (112-219)||(20309796-20309903)
chr4 (112-193)||(45080246-45080327)
chr4 (112-189)||(2758011-2758088)
chr4 (112-223)||(17262752-17262866)
chr4 (112-223)||(2767600-2767711)
[»] chr6 (5 HSPs)
chr6 (112-195)||(22724549-22724633)
chr6 (112-222)||(22337275-22337386)
chr6 (112-222)||(22267003-22267114)
chr6 (75-208)||(17795450-17795581)
chr6 (113-185)||(13256280-13256352)
[»] chr3 (2 HSPs)
chr3 (112-222)||(14753273-14753384)
chr3 (112-195)||(21487168-21487244)
[»] chr7 (7 HSPs)
chr7 (112-219)||(14616365-14616472)
chr7 (112-219)||(14616035-14616142)
chr7 (75-174)||(4007067-4007164)
chr7 (75-174)||(4012459-4012556)
chr7 (112-219)||(16030912-16031023)
chr7 (148-222)||(8835307-8835381)
chr7 (115-162)||(11733141-11733188)
[»] scaffold0039 (2 HSPs)
scaffold0039 (112-223)||(64163-64274)
scaffold0039 (112-223)||(66093-66204)
[»] scaffold0027 (1 HSPs)
scaffold0027 (136-223)||(52981-53068)
[»] chr1 (4 HSPs)
chr1 (112-223)||(17052121-17052235)
chr1 (98-162)||(41580898-41580962)
chr1 (129-189)||(17107142-17107204)
chr1 (112-174)||(18951942-18952004)
[»] scaffold0079 (1 HSPs)
scaffold0079 (116-193)||(16651-16729)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 23909634 - 23909856
Alignment:
Q  1 caagtaccatgtttagagtgtatgtcttccatttaaatagaaagtttggaacatgaacgcttcccctatgacgtgcttccactatgataggaaatttttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23909634 caagtaccatgtttagagtgtatgtcttccatttaaatagaaagtttggaacatgaacgcttcccctatgacatgcttccactatgataggaaatttttt 23909733  T
Q  101 acgaatgcatcattacaaagattccttggattcccaatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattggacaaccac 200  Q
    || ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  23909734 acaaatgcatgattacaaagattccttggattctcaatcttctatgctaagcaatcacacaagattcaatcttcaagacctcttaaaattggacaaccac 23909833  T
Q  201 atggtctttgaatctcaagcttg 223  Q
    ||| |||||||||||||||||||    
T  23909834 atgatctttgaatctcaagcttg 23909856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 17713848 - 17713745
Alignment:
Q  112 attacaaagattccttggattcccaatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattggacaaccacatggtctttga 211  Q
    |||||||||| ||||| |||||||||||||||||| ||| |||  |||| | || ||||||| ||| |||||||||||    || ||||  |||||||||    
T  17713848 attacaaagactcctttgattcccaatcttctatgttaatcaagtacactatatccaatctttaaggtctcttgaaat----cagccacgaggtctttga 17713753  T
Q  212 atctcaag 219  Q
    ||||||||    
T  17713752 atctcaag 17713745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 215
Target Start/End: Original strand, 29633864 - 29633970
Alignment:
Q  112 attacaaagattccttggattcccaatcttctatgctaagcaatcacaca--agattcaatcttcaagatctcttgaaattggac-aaccacatggtctt 208  Q
    ||||||||||||| || ||||| |||| || ||||||||||||||||| |  | || ||||||||||   ||||||||||||||| | ||||| ||||||    
T  29633864 attacaaagattcattcgattcacaatattttatgctaagcaatcacataacaaatccaatcttcaaatactcttgaaattggactatccacaaggtctt 29633963  T
Q  209 tgaatct 215  Q
     ||||||    
T  29633964 cgaatct 29633970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 18450598 - 18450487
Alignment:
Q  112 attacaaagattccttggattcccaatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattggacaaccacatggtctttga 211  Q
    |||||||||||| ||| |||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||  ||| ||||| | |||||||    
T  18450598 attacaaagatttcttcgattcctaatcttctatgctaagcaatcacacaagatccaatcttcaagaactcttgaaattacacagccacaagatctttga 18450499  T
Q  212 atctcaagcttg 223  Q
    ||||||||||||    
T  18450498 atctcaagcttg 18450487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 215
Target Start/End: Original strand, 29388728 - 29388875
Alignment:
Q  66 ctatgacgtgcttccactatgataggaaattttttacgaatgcatcattacaaagattccttggattcccaatcttctatgctaagcaatcacacaagat 165  Q
    |||| ||| ||||||||||||||  |||| | | ||| |||| || || |||||||||| || |||||  ||||||||||||||||||||||||||||||    
T  29388728 ctatcacgggcttccactatgat--gaaaatgtgtacaaatgtatgataacaaagattctttcgattcataatcttctatgctaagcaatcacacaagat 29388825  T
Q  166 tcaatcttcaagatctcttgaaattggacaaccacatggtctttgaatct 215  Q
     ||||||||||| |||||||||||| ||||  |||| |||||| ||||||    
T  29388826 ccaatcttcaagttctcttgaaattagacagtcacaaggtcttcgaatct 29388875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 20685329 - 20685438
Alignment:
Q  114 tacaaagattccttggattcccaatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattggacaaccacatggtctttgaat 213  Q
    ||||||||||| || |||||| ||| |||||||||||||||||||||||||| |||||||||| | |||||||| ||||||| ||| | | |||| |||     
T  20685329 tacaaagattctttcgattcctaatgttctatgctaagcaatcacacaagatccaatcttcaaaacctcttgaatttggacagccataagatcttcgaac 20685428  T
Q  214 ctcaagcttg 223  Q
    ||||||||||    
T  20685429 ctcaagcttg 20685438  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 16722117 - 16722050
Alignment:
Q  112 attacaaagattccttggattccc-aatcttctatgctaagcaatcacacaagattcaatcttcaaga 178  Q
    |||||||||||||||| |||| || ||| |||||||||||||||||||||||||| ||||||||||||    
T  16722117 attacaaagattccttcgatttcctaattttctatgctaagcaatcacacaagatccaatcttcaaga 16722050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 14756009 - 14756080
Alignment:
Q  149 aagcaatcacacaagattcaatcttcaagatctcttgaaattggacaaccacatggtctttgaatctcaagc 220  Q
    |||||||||||| |||||||||||||||| ||||||||||| ||  | ||| | |||||| |||||||||||    
T  14756009 aagcaatcacactagattcaatcttcaagctctcttgaaatcgggtagccaaaaggtcttcgaatctcaagc 14756080  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 23469569 - 23469458
Alignment:
Q  112 attacaaagattccttggattccc-aatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattggacaaccacatggtctttg 210  Q
    ||||||||||||| || |||||   |||||||||||||||||||||||||| ||| ||||||| |||| |||||||||| |||||||||||||||||| |    
T  23469569 attacaaagattcattcgattcattaatcttctatgctaagcaatcacacacgatccaatctttaagacctcttgaaatcggacaaccacatggtcttcg 23469470  T
Q  211 aatctcaagctt 222  Q
    ||||||||||||    
T  23469469 aatctcaagctt 23469458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 29799005 - 29798915
Alignment:
Q  112 attacaaagattccttggattcccaa-tcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattggacaaccaca 201  Q
    ||||||||||||| ||  |||| ||| ||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||| |||||    
T  29799005 attacaaagattcattcaattctcaaatcttctatgctaaacaatcacacaagatccaatcttcaagacctcttgaaattggacacccaca 29798915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 17502372 - 17502486
Alignment:
Q  112 attacaaagattccttggattcccaatcttctatgctaagcaatcacacaag--attcaatcttcaagatctcttgaaattggacaa-ccacatggtctt 208  Q
    |||| ||||||||||| ||||| |||| ||| ||||| |||||||||||| |  ||  |||||||||| ||||||||||||| |||| ||| | ||||||    
T  17502372 attagaaagattccttcgattctcaatattcaatgcttagcaatcacacatggaatctaatcttcaagctctcttgaaattgaacaatccataaggtctt 17502471  T
Q  209 tgaatctcaagcttg 223  Q
    |||| ||||||||||    
T  17502472 tgaacctcaagcttg 17502486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 13312894 - 13312838
Alignment:
Q  168 aatcttcaagatctcttgaaattggac-aaccacatggtctttgaatctcaagcttg 223  Q
    |||||||||| |||||||||||||||| ||||| | ||||||  |||||||||||||    
T  13312894 aatcttcaagctctcttgaaattggacaaaccatacggtcttaaaatctcaagcttg 13312838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 12761 - 12868
Alignment:
Q  112 attacaaagattccttggattcccaatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattggacaaccacatggtctttga 211  Q
    |||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||| |||||||||||| |||||||| || |||| ||||| | |||| ||    
T  12761 attacaaagattccttcgattcacaatcttctatactaagtaatcacacaagatccaatcttcaagacctcttgaatttagacagccacaagatcttcga 12860  T
Q  212 atctcaag 219  Q
    ||||||||    
T  12861 atctcaag 12868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 19819 - 19926
Alignment:
Q  112 attacaaagattccttggattcccaatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattggacaaccacatggtctttga 211  Q
    |||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||| |||||||||||| |||||||| || |||| ||||| | |||| ||    
T  19819 attacaaagattccttcgattcacaatcttctatactaagtaatcacacaagatccaatcttcaagacctcttgaatttagacagccacaagatcttaga 19918  T
Q  212 atctcaag 219  Q
    ||||||||    
T  19919 atctcaag 19926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 223
Target Start/End: Original strand, 18618575 - 18618682
Alignment:
Q  116 caaagattccttggattcccaatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattggacaaccacatggtctttgaatct 215  Q
    ||||||||| || |||||| |||||||||||||||||||||| |  | || ||||||| |||| |||||||||||||||| ||||| |||||||||||||    
T  18618575 caaagattcttttgattcctaatcttctatgctaagcaatcagaataaatccaatctttaagacctcttgaaattggacagccacaaggtctttgaatct 18618674  T
Q  216 caagcttg 223  Q
    ||||||||    
T  18618675 caagcttg 18618682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 20309796 - 20309903
Alignment:
Q  112 attacaaagattccttggattcccaatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattggacaaccacatggtctttga 211  Q
    |||||||||||| ||| |||||| ||| ||||||||||||||||  |||||||| |||||||||||| |||||||||||||||||||| | ||||||  |    
T  20309796 attacaaagattacttcgattcctaattttctatgctaagcaatggcacaagatccaatcttcaagacctcttgaaattggacaaccataaggtcttcaa 20309895  T
Q  212 atctcaag 219  Q
    ||||||||    
T  20309896 atctcaag 20309903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 112 - 193
Target Start/End: Complemental strand, 45080327 - 45080246
Alignment:
Q  112 attacaaagattccttggattcccaatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattgga 193  Q
    |||||||||||| ||| |||||| ||| ||||||||||||||||||||| || | |||||||||||||||||||||||||||    
T  45080327 attacaaagatttctttgattcctaattttctatgctaagcaatcacactaggtccaatcttcaagatctcttgaaattgga 45080246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 2758088 - 2758011
Alignment:
Q  112 attacaaagattccttggattcccaatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaat 189  Q
    ||||||||||||| || |||||| |||||||||||||| |||||||||| |||| ||||||||||| |||||||||||    
T  2758088 attacaaagattctttcgattcctaatcttctatgctaggcaatcacactagatccaatcttcaagctctcttgaaat 2758011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 17262752 - 17262866
Alignment:
Q  112 attacaaagattccttggattcccaatcttctatgctaagcaatcacacaa--gattcaatcttcaagatctcttgaaattggacaa-ccacatggtctt 208  Q
    |||||||||||||||| |||||  ||| |||||||||||| |||| |||||   || ||||||||||  ||| |||||||||||||| ||||| ||||||    
T  17262752 attacaaagattccttcgattcataattttctatgctaagaaatcgcacaaagaatccaatcttcaaattcttttgaaattggacaatccacagggtctt 17262851  T
Q  209 tgaatctcaagcttg 223  Q
    |||| ||||||||||    
T  17262852 tgaacctcaagcttg 17262866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 2767711 - 2767600
Alignment:
Q  112 attacaaagattccttggattcccaatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattggacaaccacatggtctttga 211  Q
    ||||||||||||| ||  ||| | |||||||||||||| ||||| |||| ||||  |||||||||| |||||||||||   ||| ||||| |||||| ||    
T  2767711 attacaaagattctttatatttctaatcttctatgctaggcaataacactagatctaatcttcaagctctcttgaaatctaacagccacaaggtcttcga 2767612  T
Q  212 atctcaagcttg 223  Q
    || |||||||||    
T  2767611 atttcaagcttg 2767600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 195
Target Start/End: Complemental strand, 22724633 - 22724549
Alignment:
Q  112 attacaaagattccttggattccc-aatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattggaca 195  Q
    |||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||| |||||||||||| ||| ||||||||||||    
T  22724633 attacaaagattccttcgattccctaatcttatatgctaaggaatcacacaagatccaatcttcaagacctcatgaaattggaca 22724549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 22337386 - 22337275
Alignment:
Q  112 attacaaagattccttggattccca-atcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattggacaaccacatggtctttg 210  Q
    |||| ||||||||||| |||||||  ||||| ||||||||||||| ||  ||||| |||||||||||  ||| |||||||| ||| ||||| |||||| |    
T  22337386 attataaagattcctttgattccctcatcttttatgctaagcaattactaaagatccaatcttcaagtcctcatgaaattgaacagccacaaggtcttcg 22337287  T
Q  211 aatctcaagctt 222  Q
    ||||||||||||    
T  22337286 aatctcaagctt 22337275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 22267114 - 22267003
Alignment:
Q  112 attacaaagattccttggattccca-atcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattggacaaccacatggtctttg 210  Q
    |||| ||||||||||| |||||||  ||||| |||| |||||||| ||  ||||| |||||||||||  ||||||||| || |||  |||| |||||| |    
T  22267114 attataaagattcctttgattccctcatcttttatgttaagcaattactaaagatccaatcttcaagtcctcttgaaactgaacagtcacaaggtcttcg 22267015  T
Q  211 aatctcaagctt 222  Q
    ||||||||||||    
T  22267014 aatctcaagctt 22267003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 17795450 - 17795581
Alignment:
Q  75 gcttccactatgataggaaattttttacgaatgcatcattacaaagattccttggattcccaatcttctatgctaagcaatcacacaagattcaatcttc 174  Q
    ||||||||||||||  |||| | ||||| | || || |||||||||||||||| |||||  |||||| ||||| |||||   |||| || | ||| ||||    
T  17795450 gcttccactatgat--gaaaatgtttacaagtgtatgattacaaagattccttcgattcataatcttttatgccaagcagctacactaggtccaaccttc 17795547  T
Q  175 aagatctcttgaaattggacaaccacatggtctt 208  Q
    || | |||||||||| ||||||||||| ||||||    
T  17795548 aatacctcttgaaatcggacaaccacaaggtctt 17795581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 13256280 - 13256352
Alignment:
Q  113 ttacaaagattccttggattcccaatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttg 185  Q
    |||||||||||||||  || ||  |||||| ||| |||||||||||||||||| |||||||||| | ||||||    
T  13256280 ttacaaagattccttcaataccatatcttcaatgttaagcaatcacacaagatccaatcttcaaaacctcttg 13256352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 14753273 - 14753384
Alignment:
Q  112 attacaaagattccttggattc-ccaatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattggacaaccacatggtctttg 210  Q
    |||||||| |||| || ||||| |||||||| | || ||||||||||||||||||||||||||||||| ||||||| |||||||| ||||| |||||| |    
T  14753273 attacaaaaattcatttgattctccaatcttatttgataagcaatcacacaagattcaatcttcaagacctcttgatattggacacccacaaggtcttcg 14753372  T
Q  211 aatctcaagctt 222  Q
    ||  ||||||||    
T  14753373 aacatcaagctt 14753384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 21487168 - 21487244
Alignment:
Q  112 attacaaagattccttggattcccaatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattggaca 195  Q
    |||||||||||||||||||||       |||||||||||| ||||||| ||||| ||||||| |||| ||||||||||||||||    
T  21487168 attacaaagattccttggatt-------ttctatgctaagaaatcacagaagatccaatcttaaagacctcttgaaattggaca 21487244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 14616365 - 14616472
Alignment:
Q  112 attacaaagattccttggattcccaatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattggacaaccacatggtctttga 211  Q
    |||||||||| ||||| |||||||||||||||||| ||| ||||||||  | ||  |||||| ||| |||||||||||  |||| ||||| |||||||||    
T  14616365 attacaaagactcctttgattcccaatcttctatgttaatcaatcacaatatatctaatctttaagctctcttgaaatcagacagccacaaggtctttga 14616464  T
Q  212 atctcaag 219  Q
    ||||||||    
T  14616465 atctcaag 14616472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 14616035 - 14616142
Alignment:
Q  112 attacaaagattccttggattcccaatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattggacaaccacatggtctttga 211  Q
    |||||| ||| ||||| |||||||||||||||||| ||| ||||||||  | || ||||||| ||| |||||||||||  |||| ||||  |||||||||    
T  14616035 attacatagactcctttgattcccaatcttctatgttaatcaatcacaatatatccaatctttaagctctcttgaaatcagacagccacgaggtctttga 14616134  T
Q  212 atctcaag 219  Q
    ||||||||    
T  14616135 atctcaag 14616142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 4007164 - 4007067
Alignment:
Q  75 gcttccactatgataggaaattttttacgaatgcatcattacaaagattccttggattcccaatcttctatgctaagcaatcacacaagattcaatcttc 174  Q
    ||||||||||||||  |||| | ||||| | || || ||||||||||||||||  ||| | ||||||||||||||| |||||||||||||| ||||||||    
T  4007164 gcttccactatgat--gaaaatgtttacaagtgtatgattacaaagattccttcaatttctaatcttctatgctaaacaatcacacaagatccaatcttc 4007067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 4012556 - 4012459
Alignment:
Q  75 gcttccactatgataggaaattttttacgaatgcatcattacaaagattccttggattcccaatcttctatgctaagcaatcacacaagattcaatcttc 174  Q
    ||||||||||||||  |||| | ||||| | || || ||||||||||||||||  ||| | ||||||||||||||| |||||||||||||| ||||||||    
T  4012556 gcttccactatgat--gaaaatgtttacaagtgtatgattacaaagattccttcaatttctaatcttctatgctaaacaatcacacaagatccaatcttc 4012459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 16031023 - 16030912
Alignment:
Q  112 attacaaagattccttggattcccaatcttctatgctaagcaatcac---acaagattcaatcttcaagatctcttgaaattggacaa-ccacatggtct 207  Q
    |||||||||||||||| |||| | |||||||||||||||| ||||||   |||| || ||||||||||  |||||| |||||||| || ||||| |||||    
T  16031023 attacaaagattcctttgatttctaatcttctatgctaagaaatcacacaacaaaatccaatcttcaaactctcttaaaattggataatccacaaggtct 16030924  T
Q  208 ttgaatctcaag 219  Q
    |  |||||||||    
T  16030923 tcaaatctcaag 16030912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 8835381 - 8835307
Alignment:
Q  148 taagcaatcacacaagattcaatcttcaagatctcttgaaattggacaaccacatggtctttgaatctcaagctt 222  Q
    |||||||||||||||||| ||||||||||||  |||||||||| || | | | | ||||||| ||||||||||||    
T  8835381 taagcaatcacacaagatccaatcttcaagagttcttgaaatttgaaagctataaggtctttaaatctcaagctt 8835307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 11733141 - 11733188
Alignment:
Q  115 acaaagattccttggattcccaatcttctatgctaagcaatcacacaa 162  Q
    |||||||||| || |||||| ||||||||||||||||||||| |||||    
T  11733141 acaaagattctttcgattcctaatcttctatgctaagcaatcccacaa 11733188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 64274 - 64163
Alignment:
Q  112 attacaaagattccttggattcccaatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattggacaaccacatggtctttga 211  Q
    |||||||||||||||| || || ||||||||||| ||||| | ||||||||||   |||| |||||  ||||| || ||||||| ||||| |||||| ||    
T  64274 attacaaagattcctttgaatctcaatcttctatactaagaattcacacaagaacaaatcctcaaggcctcttaaatttggacagccacaaggtcttcga 64175  T
Q  212 atctcaagcttg 223  Q
    ||||||||||||    
T  64174 atctcaagcttg 64163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 66093 - 66204
Alignment:
Q  112 attacaaagattccttggattcccaatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattggacaaccacatggtctttga 211  Q
    |||||||||||||||| || || ||||||||||| ||||| | ||||||||||   |||| |||||  ||||| || ||||||| ||||| |||||| ||    
T  66093 attacaaagattcctttgaatctcaatcttctatactaagaattcacacaagaacaaatcctcaaggcctcttaaatttggacagccacaaggtcttcga 66192  T
Q  212 atctcaagcttg 223  Q
    ||||||||||||    
T  66193 atctcaagcttg 66204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 52981 - 53068
Alignment:
Q  136 aatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattggacaaccacatggtctttgaatctcaagcttg 223  Q
    |||||| ||||||||| |||||||||| || |||||||||  | |||| ||||||||||||||||| |||||| |||||| |||||||    
T  52981 aatcttttatgctaagaaatcacacaatatccaatcttcacaacctctggaaattggacaaccacaaggtcttcgaatcttaagcttg 53068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 17052121 - 17052235
Alignment:
Q  112 attacaaagattccttggattcccaatcttctatgctaagcaatcacacaa--gattcaatcttcaagatctcttgaaattggacaa-ccacatggtctt 208  Q
    ||||||||| ||||||  ||||| |||||||||||||||||||||| ||||   || ||||||||||| ||||||||||||  |||| ||||| ||||||    
T  17052121 attacaaaggttccttctattcctaatcttctatgctaagcaatcagacaaagaatgcaatcttcaagctctcttgaaattaaacaatccacaaggtctt 17052220  T
Q  209 tgaatctcaagcttg 223  Q
      |||||||| ||||    
T  17052221 caaatctcaaacttg 17052235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 41580898 - 41580962
Alignment:
Q  98 tttacgaatgcatcattacaaagattccttggattcccaatcttctatgctaagcaatcacacaa 162  Q
    ||||| |||| || ||| |||||||||||| |||||| |||||| ||||||||||||||||||||    
T  41580898 tttacaaatgtataattgcaaagattccttcgattcctaatcttttatgctaagcaatcacacaa 41580962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 17107142 - 17107204
Alignment:
Q  129 gattcccaatcttctatgctaagcaatcacacaa--gattcaatcttcaagatctcttgaaat 189  Q
    |||||| |||||||||||||||||||||||||||   || ||||||||||| |||||| ||||    
T  17107142 gattcctaatcttctatgctaagcaatcacacaaagaatccaatcttcaagctctcttaaaat 17107204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 18952004 - 18951942
Alignment:
Q  112 attacaaagattccttggattcccaatcttctatgctaagcaatcacacaagattcaatcttc 174  Q
    |||||||| |||| || |||||| |||| ||||||||||| |||||||||||||  |||||||    
T  18952004 attacaaaaattctttcgattcctaatcatctatgctaagaaatcacacaagatctaatcttc 18951942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 16651 - 16729
Alignment:
Q  116 caaagattccttggattccc-aatcttctatgctaagcaatcacacaagattcaatcttcaagatctcttgaaattgga 193  Q
    ||||||||| || ||| ||| |||||| |||||||| |||||||||||||| |||||||||||  ||||| ||||||||    
T  16651 caaagattcattcgatcccctaatcttttatgctaatcaatcacacaagatccaatcttcaagtcctctttaaattgga 16729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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