View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5484_low_2 (Length: 570)
Name: NF5484_low_2
Description: NF5484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5484_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Complemental strand, 39468866 - 39468313
Alignment:
| Q |
1 |
caattgatcgacaaatgggcttctttacgatccgtaacgtaaactcacattagataaatcaaatccattcaagatatcattgagaattattagtcctaaa |
100 |
Q |
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| T |
39468866 |
caattgatcggcaaatgggcttctttacgatccgtaacgtaaactcacattagataaatcaaatccattcaagatatcattgagaattattagtcctaaa |
39468767 |
T |
|
| Q |
101 |
tgaagattagatgcaacaatacaaataaacagaaaaattgagatttagaattcagggcagaaacttacagctgaccatccatcaggtgtgttcttcagta |
200 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39468766 |
tgaagattagatgcagcaatacgaataaacagaaaaattgagatttagaattcagggcagaaacttacagctgaccatccatcaggtgtgttcttcagta |
39468667 |
T |
|
| Q |
201 |
tttgcacaggcctgcattaataaaattccatatccatagtcatcaataataataaaaacaaagagattaattcatatacacagacgttgtaaaactttat |
300 |
Q |
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| T |
39468666 |
tttgcacaggcctgcattaataaaattccatatccatagtcatcaataataataaaaacaaagagattaattcatatacacagacgttgtaaaactttat |
39468567 |
T |
|
| Q |
301 |
aattacttacgtgtcaaccgggcaaagcaacatacattcatctctatcagaacttttgaacattctccgaacaacacaatccaaaggaaggttattcata |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
39468566 |
aattacttacgtgtcaaccgggcaaagcaacatacattcatctctatcagaacttttgaacgttcttcgaacaacacaatccaaaggaaggttattcata |
39468467 |
T |
|
| Q |
401 |
ggatcaacctgttaataacttatttaagatttcgataattactcaaacgaatg--ataatcaacacnnnnnnncagaacaaagcaatactcactatggtg |
498 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
39468466 |
ggatcaacctgttaataacttatttaagatttagataattactcaaacgaatgcaataatcaacac-aaaaaacagaacaaagcaatactcactatggtg |
39468368 |
T |
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| Q |
499 |
ataagccgatttgccgaagtaagcagaagttcaccgttttcgtcaatggcaaacc |
553 |
Q |
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| T |
39468367 |
ataagccgatttgccgaagtaagcagaagttcaccgttttcgtcaatggcaaacc |
39468313 |
T |
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