View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5484_low_8 (Length: 256)
Name: NF5484_low_8
Description: NF5484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5484_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 16792968 - 16792795
Alignment:
| Q |
1 |
cctgcattaacaagatgcaaccgcgattcaaagtttagcaagctgtggaagagagctgcaccttgtgctacaaatttatcagaactagatcatataaacg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16792968 |
cctgcattaacaagatgcaaccgcgattcaaagtttagcaagctgtggaagagagctgcaccttgtgctacaaatttatcagaactagatcatataaacg |
16792869 |
T |
|
| Q |
101 |
gaacaaatgaaggtcacaatccaaaaccatcaactagccgaggaacacaacgactctacagtcgtctaaacacc |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
16792868 |
gaacaaatgaaggtcacaatccaaaaccatcaactagccgaggaacacaacgactctacattcgtctcaacacc |
16792795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 32735252 - 32735296
Alignment:
| Q |
130 |
tcaactagccgaggaacacaacgactctacagtcgtctaaacacc |
174 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| | |||||| |
|
|
| T |
32735252 |
tcaactagccgaggaacacaacgcctctacattcgtatcaacacc |
32735296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 14876384 - 14876343
Alignment:
| Q |
133 |
actagccgaggaacacaacgactctacagtcgtctaaacacc |
174 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||| |||||| |
|
|
| T |
14876384 |
actagccgaggaacacaacgcctctacattcgtctcaacacc |
14876343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University