View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5485_high_3 (Length: 442)
Name: NF5485_high_3
Description: NF5485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5485_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 165 - 425
Target Start/End: Complemental strand, 15397017 - 15396769
Alignment:
| Q |
165 |
tgatgatagaaaacagcgatgctagcaatcaggaggtatgttattgaaatatgtttcgctgtaaatagtattagtggtcgagtaaaccacggattaaacc |
264 |
Q |
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| T |
15397017 |
tgatgatagaaaacagtgatgctagcaatcagg---tatgttattgaaatatgtttcgctgtaaatagcattagtggttgagtaaaccaccgattaaacc |
15396921 |
T |
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| Q |
265 |
ctaaaatgatgaataatatttcatgaataaaacagcatataatatataccttgaatggtatgtagcgaatcaggaaaagagtgagcctgagataatcgta |
364 |
Q |
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| T |
15396920 |
ctaaaatgat---------ttcatgtataaaacagcatatataatataccttgaatggtatgtagcgaatcaggaaaagagtgagcctgagataatcgta |
15396830 |
T |
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| Q |
365 |
acaaagcaacaccccatcttgtcaaattctcagcatcatgagggtttttgttgtacctttg |
425 |
Q |
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| T |
15396829 |
acaaagcaacaccccatcttgtcaaattctcagcatcatgagggtttttgttgtacctttg |
15396769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 15397167 - 15397095
Alignment:
| Q |
17 |
aaacagcatataataaaaccataataaacaacagtta-ctgttttatttcgatcattcattcatttgtttttc |
88 |
Q |
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| T |
15397167 |
aaacagcatataataaaaccataataaacaacagttagctgttttatttcgatcattcattcatttgtttttc |
15397095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 394
Target Start/End: Complemental strand, 5947250 - 5947166
Alignment:
| Q |
310 |
ataccttgaatggtatgtagcgaatcaggaaaagagtgagcctgagataatcgtaacaaagcaacaccccatcttgtcaaattct |
394 |
Q |
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| T |
5947250 |
ataccttcaacggtatgtaatgaatcaggaaaagactgatccgaggataatcgtaacaaagcaacagcccatcgagtcaaattct |
5947166 |
T |
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