View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5485_high_4 (Length: 427)
Name: NF5485_high_4
Description: NF5485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5485_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 7798480 - 7798723
Alignment:
| Q |
20 |
aagataaggttttatgtgtttgaatgagttgttcagagattacagaataagctgcgatttgtttccgaagagtttcgacttgttcattggtcatcacatt |
119 |
Q |
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| T |
7798480 |
aagataaggttttatgtgtttgaatgagttgctcagagattacagaataaactgctatttgtttccgaagagtttcaacttgttcattggtcatcacatt |
7798579 |
T |
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| Q |
120 |
cacttgcatcattccaacattcgcgttctgattaaaaccgttcctctgccactccatctctttctttttctgtaaaataaaaagcgattaatgattttca |
219 |
Q |
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| T |
7798580 |
cacttgcatcattccaacattcgcgttctgattaaaaccgttcctctgccactccatctctttctttttctgtaaaataaaaagcgattaatgattttca |
7798679 |
T |
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| Q |
220 |
tttctatnnnnnnngtgatctgtgagaagaagaaaccaatggtg |
263 |
Q |
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| T |
7798680 |
tttctataaaaaaagtgatctgtgagaagaagaaaccaatggtg |
7798723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 262 - 412
Target Start/End: Original strand, 7798764 - 7798894
Alignment:
| Q |
262 |
tgatcaaaattctagtttctaacaactagggcatggatcagatcaatattcttctcaataaagatgaataagagttgtagttttgctctattaacaatga |
361 |
Q |
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| T |
7798764 |
tgatcaaaattctagtttctaacaactagggcatggatcagatcaatattcttctcaataaagatgaa--------------------tattaacaatga |
7798843 |
T |
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| Q |
362 |
tcatagcataatgaagatgaataagagttgtatagttcttacttgatgatg |
412 |
Q |
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| T |
7798844 |
tcatagcataatgaagatgaataagagttgtatagttcttacttgatgatg |
7798894 |
T |
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