View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5485_high_5 (Length: 385)
Name: NF5485_high_5
Description: NF5485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5485_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 502038 - 501947
Alignment:
| Q |
13 |
aatatcaagtagtaaattcattttgcttaatctttgtacaa------cgtggttggtcatatataattcaattcattacagattagatttga |
98 |
Q |
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| T |
502038 |
aataccaagtagtaaattcattttgcgtaatctttgtacaagtacaacatggttggtcatatataattcaattcattacagattagatttga |
501947 |
T |
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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 369
Target Start/End: Complemental strand, 501949 - 501914
Alignment:
| Q |
334 |
tgaacatcaacagagacaatgtccttatgaagtttc |
369 |
Q |
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| T |
501949 |
tgaacatcaacagagacaatgtccttatgaagtttc |
501914 |
T |
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