View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5485_high_7 (Length: 247)
Name: NF5485_high_7
Description: NF5485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5485_high_7 |
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| [»] scaffold1268 (1 HSPs) |
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| [»] scaffold1267 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 35868937 - 35868716
Alignment:
| Q |
1 |
attcgagagatacaactttggacagcttctacttgtggctttgtggcatatttgcaattcgaggagcttgtcaaaagaggaattcttccattcaaaggta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35868937 |
attcgagagatacaactttggacagcttctacttgtgggtttgtggcatatttgcaattcgaggagcttgtcaaaagaggaattcttccattcaaaggta |
35868838 |
T |
|
| Q |
101 |
aatttaaccgatctttttctctatgtttctttaacaagtcatcgtgattttgtaaaagttaaatttgtaacttcaattaactcgtcatgaaattaatata |
200 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||| ||||||||| |||| |
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| T |
35868837 |
aatttaaccgatctttttctctatgtttc-ttaataagtcatcgtggttttgtaaaagctaaatttataacttcaattaactcgtgatgaaattagtata |
35868739 |
T |
|
| Q |
201 |
tacttccctgatgactattatat |
223 |
Q |
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||||||||| | ||||||||||| |
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| T |
35868738 |
tacttccctaaagactattatat |
35868716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 35854312 - 35854229
Alignment:
| Q |
17 |
tttggacagcttctacttgtggctttgtggcatatttgcaattcgaggagcttgtcaaaagaggaattcttccattcaaaggta |
100 |
Q |
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||||||| |||||| ||||||||||||| | ||||||||||| || |||||||| |||||||||||||||||||||||||||| |
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| T |
35854312 |
tttggactgcttctgcttgtggctttgtcggatatttgcaatatgatgagcttgttaaaagaggaattcttccattcaaaggta |
35854229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 35759572 - 35759489
Alignment:
| Q |
17 |
tttggacagcttctacttgtggctttgtggcatatttgcaattcgaggagcttgtcaaaagaggaattcttccattcaaaggta |
100 |
Q |
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||||||| |||||| ||||||| ||||||| ||||||||| | || || |||||||||||||| |||||||||||| |||||| |
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| T |
35759572 |
tttggactgcttctgcttgtgggtttgtgggatatttgcattatgatgaacttgtcaaaagaggcattcttccattccaaggta |
35759489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1268 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold1268
Description:
Target: scaffold1268; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 253 - 472
Alignment:
| Q |
1 |
attcgagagatacaactttggacagcttctacttgtggctttgtggcatatttgcaattcgaggagcttgtcaaaagaggaattcttccattcaaaggta |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
253 |
attcgagagatacaactttggacagcttctacttgtgggtttgtggcatatttgcaattcgaggagcttgtcaaaagaggaattcttccattcaaaggta |
352 |
T |
|
| Q |
101 |
aatttaaccgatctttttctctatgtttctttaacaagtcatcgtgattttgtaaaagttaaatttgtaacttcaattaactcgtcatgaaattaatata |
200 |
Q |
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|
||||||||||||||||||||||||||||| |||| | ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
353 |
aatttaaccgatctttttctctatgtttc-ttaatatgtcatcgtggttttgtaaaagctaaatttgtaacttcaattaactcgtgatgaaatttgtata |
451 |
T |
|
| Q |
201 |
tacttccctgatgactattatat |
223 |
Q |
| |
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||| |||||| ||||||||||| |
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| T |
452 |
tac--ccctgaagactattatat |
472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1267 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold1267
Description:
Target: scaffold1267; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 253 - 472
Alignment:
| Q |
1 |
attcgagagatacaactttggacagcttctacttgtggctttgtggcatatttgcaattcgaggagcttgtcaaaagaggaattcttccattcaaaggta |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
253 |
attcgagagatacaactttggacagcttctacttgtgggtttgtggcatatttgcaattcgaggagcttgtcaaaagaggaattcttccattcaaaggta |
352 |
T |
|
| Q |
101 |
aatttaaccgatctttttctctatgtttctttaacaagtcatcgtgattttgtaaaagttaaatttgtaacttcaattaactcgtcatgaaattaatata |
200 |
Q |
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||||||||||||||||||||||||||||| |||| | ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||| |
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| T |
353 |
aatttaaccgatctttttctctatgtttc-ttaatatgtcatcgtggttttgtaaaagctaaatttgtaacttcaattaactcgtgatgaaatttgtata |
451 |
T |
|
| Q |
201 |
tacttccctgatgactattatat |
223 |
Q |
| |
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||| |||||| ||||||||||| |
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|
| T |
452 |
tac--ccctgaagactattatat |
472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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