View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5485_low_1 (Length: 696)
Name: NF5485_low_1
Description: NF5485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5485_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 18 - 595
Target Start/End: Original strand, 4712091 - 4712679
Alignment:
| Q |
18 |
ataagcttgaaaaagttgcaacaacacaacacaaaaagtaacttcacctttcatttactactccttatgataagctatctaaaattacatgcaaacgata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4712091 |
ataagcttgaaaaagttgcaacaacacaacacaaaaagtaacttcacctttcatttactactccttatgataagctatctaaaattacatgcaaacgata |
4712190 |
T |
|
| Q |
118 |
taaacacaaccgagtcattcatgaatttataattaaccnnnnnnnnnnnnnnnnccactaatgatgaggtttctcaaacctctacgccaccaacaccaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4712191 |
taaacacaaccgagtcattcatgaatttataattaaccttttttgtttttttt-caactaacgacgaggtttctcaaacctctacgccaccaacaccaac |
4712289 |
T |
|
| Q |
218 |
acctttctccagctatcataaactatacgtatacgcaatcatatacatatatgtatttgcatgtgtatgtttttcctcaaattcccgggaatcaataagc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4712290 |
acctttctccagctatcataaactatacgtatacgcaatcatatacatatatgtatttgcatgtgtatttttttcctcaaattcccgggaatcaataagc |
4712389 |
T |
|
| Q |
318 |
tttaagaacaagatcattgacaacttatactactaatgtatat----ctcttattgataaagatttaaannnnnnn------gtaagaaaagtggaacat |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4712390 |
tttaagaacaagatcattgacaacttatactactaatgtatatatatctcttattgataaagatttattgttttttttttttgtaagaaaagtggaacat |
4712489 |
T |
|
| Q |
408 |
gtgttacatatatgtattatttgcattatatggaaacaagcatttttgtttttgtaattaatttgagtaagcgcagttcaaatgataaaaagttgcgaga |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4712490 |
gtgttacatatatgtattatttgcattatatggaaacaagcatttttgtttttgtaattaatttgagtaagcgcagttcaaatgataaaaagttgcgaga |
4712589 |
T |
|
| Q |
508 |
catttgatatgtagaagcgcaaattctaatcaacaatgttcaagttcttcacattta--gtgtgtgagtttagttaccggactatttgcc |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
4712590 |
catttgatatgtagaagcgcaaattctaatcaacaatgttcaagttcttcacatttagtgtgtgtgagtttagttaccgaactatttgcc |
4712679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University