View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5485_low_10 (Length: 229)
Name: NF5485_low_10
Description: NF5485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5485_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 37844169 - 37844361
Alignment:
| Q |
19 |
acaatatacatgcaccaataccgacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacatatatcaaagttctgtcgatgt |
118 |
Q |
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| T |
37844169 |
acaatatacatgcaccgataccgacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacatgtatcgaagttctgtcgatgt |
37844268 |
T |
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| Q |
119 |
tagacatcaacacctatcgagcccttgaacacgatttcaaattgaagaatccatactagtctgctagataatgtatactaacattttaaatag |
211 |
Q |
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| T |
37844269 |
tagacatcaacacctatcgagcccttgaacacgatttcaaattgaagaatccatactagtctgctagataatgtatactaacattttaaatag |
37844361 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 16330969 - 16331029
Alignment:
| Q |
37 |
taccgacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacat |
97 |
Q |
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| T |
16330969 |
taccgacatgtagacactagtaataatttaagaaaatgaaaatgattaaatgtaaccacat |
16331029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 16567286 - 16567342
Alignment:
| Q |
41 |
gacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacat |
97 |
Q |
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| T |
16567286 |
gacatgtagacacatgcaataatttaagaaaatggaaatgattgaatgtaaccacat |
16567342 |
T |
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