View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5485_low_2 (Length: 448)

Name: NF5485_low_2
Description: NF5485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5485_low_2
NF5485_low_2
[»] chr1 (1 HSPs)
chr1 (55-347)||(26782182-26782473)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 55 - 347
Target Start/End: Original strand, 26782182 - 26782473
Alignment:
Q  55 tttatcaaaaagtaaacttaactacacaaaattttcaaatcccaacttagaatcataatacacgaatgcgtgtaagtttgataaaatagtagtttgatag 154  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26782182 tttatcaaaaagtaaacttagctacacaaaattttcaaaccccaacttagaatcataatacacgaatgcgtgtaagttcgataaaatagtagtttgatag 26782281  T
Q  155 ttgcaaggactatatcaaagtccatacaacaatagataaacaatagcttttcaaaacagaagagcacactgcgaaaaccgaaaaactttaatgatcaaag 254  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   || || |||||    
T  26782282 ttgcaaggactatatcaaagtccatgcaacaatagataaacaatagcttttcaaaacagaagagcacactacgaaaaccgaaaaacaaaaacgagcaaag 26782381  T
Q  255 aaactttaattgcttttatgtatgtttagagaaccttaaagaataaccgttcatatattcttttacaccaagaaaattcaatttctaatgtaa 347  Q
    ||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26782382 aaactttaatttc-tttatgtatgtttggagaaccttaaagaataaccgttcatatattcttttacaccaagaaaattcaatttctaatgtaa 26782473  T

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